Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20781g00001 ATGCAAACTGAGCCTACAAGCCTTGATCCTTGTCCTGCTGAACCTCCAAGACCGAAAACTCACTCCTTCTCCAAGGTCTTAACTAACTCTGATACAAGTACTCATGGTGGCTTTTCTATTCATAAGAAGCCTGCCACTGAATGTCTTCCTCCATTGGATTTGTCCCAATCTACTCCAACTCAAGAATTGGTTGCTAGGGACCTTCACAATTATGAATGGCACTTTAAGCATATATTTAGAGGTCATCCCCGCAGACACTTGCTCACAACTGGATGGAGTACTTTTGTGACATCCAAAAGACTAGTCGCCGGAGATACATTTGTGTTTCTGAGAGGGGAAAACGGAGAATTACGTGTCGGAGTGAGGCATCTTGCTTCTCCACAGAGCTGCATGCCTTCATCTGTGATTTCTGGTCAGAGCATGCACCTTGGAGTCCTTGCAACTGCATCTCATGCTGTTGCAACTCAAACTCTTTTTGTA 480 0.45 MQTEPTSLDPCPAEPPRPKTHSFSKVLTNSDTSTHGGFSIHKKPATECLPPLDLSQSTPTQELVARDLHNYEWHFKHIFRGHPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRHLASPQSCMPSSVISGQSMHLGVLATASHAVATQTLFV 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20781g00001 160 SMART B3_2 23 125 IPR003340 GO:0003677
Trme20781g00001 160 Gene3D - 20 124 IPR015300 -
Trme20781g00001 160 MobiDBLite consensus disorder prediction 22 39 - -
Trme20781g00001 160 FunFam Auxin response factor 21 125 - -
Trme20781g00001 160 Pfam B3 DNA binding domain 23 122 IPR003340 GO:0003677
Trme20781g00001 160 ProSiteProfiles B3 DNA-binding domain profile. 23 125 IPR003340 GO:0003677
Trme20781g00001 160 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 159 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme20781g00001 160 MobiDBLite consensus disorder prediction 1 44 - -
Trme20781g00001 160 SUPERFAMILY DNA-binding pseudobarrel domain 10 152 IPR015300 -
Trme20781g00001 160 CDD B3_DNA 21 122 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20781g00001 Trme-Chr20781 20 1201 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20781g00001 2 160 B3 DNA Binding Superfamily AT2G46530 77.358 5.06e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme20781g00001 B3 1.7e-20 CL0405