Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20766g00001 ATGCTTTCTTTCTCAGTGGTTGAAAATGGTGATAACTGGAGTGCCGGACAAAGGCAATTATTTTGCCTCGGAAGAGCGTTGCTGAAAAAAAGCAGCATATTAGTACTAGATGAAGCAACAGCCTCRGTGGATTCTGCAACTGATGGRGTGATACAGGATATCATCTGTCAAGAATTCAACAACCGAACAGTTGTCACAATAGCTCATCGAATCCACACAGTTATCGATAGCGACTTGGTTTTGGTTCTCAGTGATGGAAGAATTGCAGAATATGATGAACCATCAAAGTTACTTGAAAGAGAAGATTCCTTCTTCTACAAACTTATAAAGGAGTACTCTAGCAGATCCCATAGCTTCAACAACTTGGCATCTCAACATGTCCATGGATAA 390 0.4026 MLSFSVVENGDNWSAGQRQLFCLGRALLKKSSILVLDEATASVDSATDGVIQDIICQEFNNRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDEPSKLLEREDSFFYKLIKEYSSRSHSFNNLASQHVHG 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20766g00001 129 Pfam ABC transporter 8 41 IPR003439 GO:0005524
Trme20766g00001 129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 108 IPR027417 -
Trme20766g00001 129 FunFam AGAP012735-PA 1 114 - -
Trme20766g00001 129 Gene3D - 2 127 IPR027417 -
Trme20766g00001 129 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 8 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20766g00001 Trme-Chr20766 703 1275 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20766g00001 6 110 Calmodulin-binding Proteins AT2G36910 38.679 5.99e-18 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20766g00001 - - gmx:100809749 223.402