Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20760g00001 ATGGAAGCACCGGATTACTTTGTCGGTGGCTACTACGGTGCCGGAGTGCACGGAGGAATCGACCAATTCTCACCGGAAAAGCGTCACGGTCACGGTGTTGGTTCTGACCAGAAGCCTTGTGAGTCTTTTGCCATTGATGACTTACTTGATTTCTCCAATGCTGATGCTATTATGTCTGACGGTTTCTTCGACAATGTCGCCGGAAATTCCACCGACTCTTCCAATGTTACCGCCGTTGATAGCTGTAACTCGTCAGGCTCGGGCGGCGAAAATCGCTTTGCAGGCACAATTGTTCCGTATGGTTTCTCCGGTGATGTTCAACTCAACGGTGAACTCTGTGTTCCGTATGATGAAATGGCGGAATTGGAATGGCTCTCGAATTTCGTGGAAGATTCATACTCCGCCGAAGAGGAATTGAAAACACTGCAACTTCTCTCCGGCGCCGGCGCAGTTAAACCACAGACACCAGAATCCTCCTCTTCCACCGACACTCTCCCGGCGTTTTCATCTGACGAGAGTGCTCGGAATTTTAACGCGTCGTTTCTCGGACCGGAAACACCTCTCCCTGGAAAAGCAAGGAGCAAACGCTCACGCGCTGCACCAGGCGACTGGTCCACGCGCCTACTTCATATCCCTGACGCGCCACCACAACAAATGAAAATTGTTCAAGTGAAGAAACGTGAGGATCCAAATGTAGAATGTTCTGGAAGGAAATGTCTCCACTGCGGCACTGATAANNNNNNNNNNTGGAGAACCGGTCCAATGGGACCGAAAACACTTTGCAATGCTTGTGGTGTTAGGTTTAAGTCCGGTAGGTTGGTGCCGGAGTATCGACCGGCGGCGAGTCCAACTTTTGTATCGGCGAAGCATTCAAATTCGCATAGGAAAGTTTTGGAACTAAGGAGGCAGAAAGAGATGCAAAGATCACAGCATCAACAACTTCTGAGTCACAGTTCAATTTTCGGCGTATCATCTAACGGTGGAGATGACTTCATCAATTATCATCATCATCATCAT 1017 0.4867 MEAPDYFVGGYYGAGVHGGIDQFSPEKRHGHGVGSDQKPCESFAIDDLLDFSNADAIMSDGFFDNVAGNSTDSSNVTAVDSCNSSGSGGENRFAGTIVPYGFSGDVQLNGELCVPYDEMAELEWLSNFVEDSYSAEEELKTLQLLSGAGAVKPQTPESSSSTDTLPAFSSDESARNFNASFLGPETPLPGKARSKRSRAAPGDWSTRLLHIPDAPPQQMKIVQVKKREDPNVECSGRKCLHCGTDXXXXWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSAKHSNSHRKVLELRRQKEMQRSQHQQLLSHSSIFGVSSNGGDDFINYHHHHH 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20760g00001 339 SMART GATA_3 233 283 IPR000679 GO:0006355|GO:0043565
Trme20760g00001 339 PIRSF Txn_fac_GATA_plant 28 327 IPR016679 GO:0003677|GO:0005634|GO:0045893
Trme20760g00001 339 FunFam GATA transcription factor 227 314 - -
Trme20760g00001 339 PANTHER GATA TRANSCRIPTION FACTOR 38 313 - -
Trme20760g00001 339 MobiDBLite consensus disorder prediction 152 180 - -
Trme20760g00001 339 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 236 296 - -
Trme20760g00001 339 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
Trme20760g00001 339 Gene3D - 234 315 IPR013088 GO:0006355|GO:0008270
Trme20760g00001 339 MobiDBLite consensus disorder prediction 150 216 - -
Trme20760g00001 339 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Trme20760g00001 339 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20760g00001 Trme-Chr20760 167 1346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20760g00001 41 339 C2C2-Gata Transcription Factor Family AT4G32890 46.774 1.21e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trme20760g00001 GATA 8.6e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20760g00001 - - vvo:131618132 577.4