Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme207434g00001 GGAGCTTGCAAGAAACCTCCAGTGTTCTGTATAATCACTGAATATATGGCTGGAGGCTCATTGAGAAAATACCTGCAACAACAAGGACCACATTCAGTTCCTCTCAAACTAGTTCTTGAATTAGCCCTTGACATTGCAAGGGGAATGCAATATCTTCATTCTCAAGGAATACTTCATAGGGATCTCAAATCAGAAAATCTGTTATTGGATGAAGAAATGTGTGTAAAAGTGGCAGATTTTGGTATCTCATGTTTAGAATCTCAAGCCGGCAGCGCGAAAGGATTCACCGGAACTTACCGTTGGATGGCGCCTGAAATGATCAGAGAAAAACGGCATACGAAAAAAGTAGATGTCTATAGTTTTGCCATAGTTCTATGGGAGCTAATAACAGGACTCACACCATTTGATAACATGACACCAGAACAAGC 428 0.4089 GACKKPPVFCIITEYMAGGSLRKYLQQQGPHSVPLKLVLELALDIARGMQYLHSQGILHRDLKSENLLLDEEMCVKVADFGISCLESQAGSAKGFTGTYRWMAPEMIREKRHTKKVDVYSFAIVLWELITGLTPFDNMTPEQA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme207434g00001 143 ProSiteProfiles Protein kinase domain profile. 1 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme207434g00001 143 PRINTS Tyrosine kinase catalytic domain signature 13 26 IPR001245 GO:0004672|GO:0006468
Trme207434g00001 143 PRINTS Tyrosine kinase catalytic domain signature 51 69 IPR001245 GO:0004672|GO:0006468
Trme207434g00001 143 PRINTS Tyrosine kinase catalytic domain signature 116 138 IPR001245 GO:0004672|GO:0006468
Trme207434g00001 143 PRINTS Tyrosine kinase catalytic domain signature 97 107 IPR001245 GO:0004672|GO:0006468
Trme207434g00001 143 PANTHER SERINE-THREONINE PROTEIN KINASE 1 138 - -
Trme207434g00001 143 Pfam Protein tyrosine and serine/threonine kinase 1 142 IPR001245 GO:0004672|GO:0006468
Trme207434g00001 143 Gene3D Transferase(Phosphotransferase) domain 1 1 143 - -
Trme207434g00001 143 ProSitePatterns Serine/Threonine protein kinases active-site signature. 57 69 IPR008271 GO:0004672|GO:0006468
Trme207434g00001 143 SUPERFAMILY Protein kinase-like (PK-like) 1 142 IPR011009 -
Trme207434g00001 143 SMART serkin_6 1 142 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme207434g00001 Trme-Chr207434 3 430 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme207434g00001 1 143 MAP Kinase Kinase Kinase AT1G62400 69.930 1.06e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trme207434g00001 PK_Tyr_Ser-Thr 1.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme207434g00001 - - gmx:100785212 273.478