Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20710g00001 ATGCCCAACATGCCGAATTACTCTGGCTCTGTCTCAGGGGCATTCCCAGGATTGTTGGGAATGATTCCAGGAATTATTGCTGGAACTTCTGGGGGTGCTATTTTGCCAGGAATTGGAGCCACACTTGGGGAAGTTTGTCGCGATTACTTGAATGGGCGCTGTGCAAAAGTTGATTGTAATTTGAATCACCCACCTCATAATTTGCTCATGACTGCCTTAGCTGCCACAACTTCAATGGGATCACTTAGCCAGGCTCCTATGGCACCTTCTGCTGCTGCAATGGCTGCCGCTCAGGCAATAGTTGCTGCTCAAGCCCTTCAAGCTCATGCAGCTCAGGTGCAAGCTCAGTCAGCAAAAGATTCCGCTGGTTCACCTGATAAAGCCAATAAGGAGGATGTGTTGAAGAAAACTCTTCAAGTTAGCAATCTTAGCCCACTTCTCAATGCGGAACAGCTAAAACAACTCTTTGGTTTCTGTGGCACTGTTGTTGAATGTACAATCACTGAGTCAAAGCATTTTGCTTATATAGAATACTCAAAACCTGAAGAAGCAACTGCTGCTATGGCATTGAACAACATTGATGTTGGGGGGCGTCCTTTGAATGTTGAAATGGCTAAATCACTTCCGCCGAAACCAACTATGAATTCTTCACATGCTTCATCCTCTCTTCCTTTGATGATGCAGCAAGCTGTTGCCATGCAACAGATGCAATTCCAGCAAGCACTGATTATGCAGCAAACGATGACTGCACAGCAGGCTGCTAACCGAGCTGCAACCATGAAATCTGCCACAGATTTAGCAGCAGCACGAGCTTTAGAAATAAGTAAGAAATTGAATCCTGATGGACTTGAAAATGAAGAAAAAGAGACGAAACAGAAATCCAG 884 0.4514 MPNMPNYSGSVSGAFPGLLGMIPGIIAGTSGGAILPGIGATLGEVCRDYLNGRCAKVDCNLNHPPHNLLMTALAATTSMGSLSQAPMAPSAAAMAAAQAIVAAQALQAHAAQVQAQSAKDSAGSPDKANKEDVLKKTLQVSNLSPLLNAEQLKQLFGFCGTVVECTITESKHFAYIEYSKPEEATAAMALNNIDVGGRPLNVEMAKSLPPKPTMNSSHASSSLPLMMQQAVAMQQMQFQQALIMQQTMTAQQAANRAATMKSATDLAAARALEISKKLNPDGLENEEKETKQKS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20710g00001 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 207 IPR000504 GO:0003723
Trme20710g00001 294 ProSiteProfiles Zinc finger C3H1-type profile. 45 66 IPR000571 GO:0046872
Trme20710g00001 294 SUPERFAMILY RNA-binding domain, RBD 123 216 IPR035979 GO:0003676
Trme20710g00001 294 CDD RRM_SF 138 203 - -
Trme20710g00001 294 MobiDBLite consensus disorder prediction 277 294 - -
Trme20710g00001 294 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 80 291 - -
Trme20710g00001 294 SMART rrm1_1 137 203 IPR000504 GO:0003723
Trme20710g00001 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 200 IPR000504 GO:0003723
Trme20710g00001 294 Gene3D - 96 222 IPR012677 -
Trme20710g00001 294 MobiDBLite consensus disorder prediction 275 294 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20710g00001 137 206 Eukaryotic Initiation Factors Gene Family AT1G71770 35.526 6.64e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20710g00001 - - tpra:123914208 462.611