Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20689g00001 CTGTATACTAGAGCCCAGTTGAATCAACACATAAGCACTGGTGATTCCGAGGTGGATGGAAGTGAGAGTGACAGAGGTGGTTTTATGGGGCATCCTATGTGTGAATTTTGCAGAACCCCATTTTATGGGGACAATGAACTGTACACACACATGTCTACAGAACATTATACTTGTCATATATGCCAAAGGCAGCATCCAGGACAATATGAATACTATAAGAATTACGATGACCTAGAGATCCATTTCCGACAACAGCATTTCTTATGTGAAGATGAGGCTTGCCTTGCCAAGAAATTTATTGTTTTTCAATCTGAATCAGAGATGAAGAGACATAATGCTATGGAACATGGAGGGCGTATGTCACGGTCAAAGCGTAATGCTGCTCTTCAGGCATGTACAATCACAATCTTTTCTTCTCGAAATCACTTCTCATGTCTGTTGATACCAACTAGTTTTCGATATAGACACAATAATGAACAGGATCAACGCCGTGGAAGAGGCCGTACGTTTCGTCGTGATCATTCTGAAAATCAACTTTCCATGGCCATTGAAGCCAGTTTGGAGACTGCTAATGCTGAGCAAACATATCGTGAGCCAACTTCAAGTAATGGGCAAATTGCTTATGATGACAGGGATGCAGATATTGGTTCCATCATCAATCCGTTTGAATCATTAGCTACGGCAGGTTCTGAATCAACTTCAAGATACCGTCAGGCCTTAGGGCATAGCTCTAAACCATTGGTAGATTCTTCCTTTCCTCCACTTCCCGTAACTTCCAGCAATGGCAAGCAAAGGTCCAAACATGAGCTTGAAGGTTCATC 821 0.4227 MYTRAQLNQHISTGDSEVDGSESDRGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRQQHFLCEDEACLAKKFIVFQSESEMKRHNAMEHGGRMSRSKRNAALQACTITIFSSRNHFSCLLIPTSFRYRHNNEQDQRRGRGRTFRRDHSENQLSMAIEASLETANAEQTYREPTSSNGQIAYDDRDADIGSIINPFESLATAGSESTSRYRQALGHSSKPLVDSSFPPLPVTSSNGKQRSKHELEGSS 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20689g00001 274 Coils Coil 267 274 - -
Trme20689g00001 274 SMART c2h2final6 56 86 IPR013087 -
Trme20689g00001 274 SMART c2h2final6 87 116 IPR013087 -
Trme20689g00001 274 SMART c2h2final6 32 55 IPR013087 -
Trme20689g00001 274 MobiDBLite consensus disorder prediction 229 274 - -
Trme20689g00001 274 PANTHER ZINC FINGER PROTEIN 598 1 266 IPR044288 GO:0061630|GO:0072344
Trme20689g00001 274 MobiDBLite consensus disorder prediction 1 16 - -
Trme20689g00001 274 MobiDBLite consensus disorder prediction 157 177 - -
Trme20689g00001 274 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20689g00001 Trme-Chr20689 1 1348 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20689g00001 1 263 C2H2 Transcription Factor Family AT3G62240 58.333 2.85e-96 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme20689g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20689g00001 K22381 - gmx:100780426 435.261