Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme206872g00001 TGGATAAATTCTGGTCACCATACTTGTCCTAAAAGTGGACAAAGACTAATTCACACTGCATTAATACCAAACTATGCATTGAAGAGCCTTGTTCATCAATGGTGCTACGAAAACAATGTCTCGGTGAACGAACCAAAGGGAAACAACAACAGTGGCAGTAGCAGCAAAAGGCACAAGAATGAGAATGCAATTGATCATATTTCAGCAAACAAAGCATCAAAAGATGCTGTCAAAATGACAGCAGAGTTTCTTGTTGGAAAATTAGCAACCGGTTCGACCGATATCCAAAGACAATCCGCATACGAGATTCGTCTGCTCGCGAAAACCGGTATGGCCAACCGACAAATCATAGCCGAGGTAGG 362 0.4227 WINSGHHTCPKSGQRLIHTALIPNYALKSLVHQWCYENNVSVNEPKGNNNSGSSSKRHKNENAIDHISANKASKDAVKMTAEFLVGKLATGSTDIQRQSAYEIRLLAKTGMANRQIIAEVG 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme206872g00001 121 ProSiteProfiles U-box domain profile. 1 41 IPR003613 GO:0004842|GO:0016567
Trme206872g00001 121 MobiDBLite consensus disorder prediction 41 57 - -
Trme206872g00001 121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 43 IPR013083 -
Trme206872g00001 121 MobiDBLite consensus disorder prediction 41 63 - -
Trme206872g00001 121 PANTHER U BOX DOMAIN-CONTAINING 1 119 - -
Trme206872g00001 121 SUPERFAMILY RING/U-box 1 42 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme206872g00001 1 121 U-box Gene Family AT1G29340 42.149 1.04e-21 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme206872g00001 - - tpra:123924117 242.662