Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20685g00001 ATTAATGATAAAGGTGTGTCTATTCGGGAAATTGGGAAGGACCGAAAAAGGACTAGAACTAGGAGTGGCTCGAGCGAAGATAGCACAAATCCTGCTTCTCATGGTTCATGCCATGGTAGTCCACCAAATGAAATTTCAACTGTAAAAGATCTATTCATTCCATCCAACAATGAGCAATGTGTTGTGTTGAGGGGATCACCAGAGTCGAGAGTGCAGCCAAATAATGCATTCAACTCTCCAACTGCTTACTGTTTGCCTGACAACGTGCTAGCAGAACTTCAAGAGCCATTCGGAGGAATGCTAATAGAGGACGCTGGAAGTTCGAAAGACTTAAGAAATTTGTGTCCTTCGGTAGCTGAGGCCATTTTGGAGGATATGGCTCCAGAAGCTTGTGGAACTAATCTTCCAGGTTCATATATGGCTCCTCCTAAACAATGCATGGATACTATTAATAATAATAATAATAATTCAGTGATGCCTTTCGCAGTTAGAAAAGAAATGAAAACTGTGACTATTAAGGCAACATATAGAGAAGATATCATAAGATTTAGGGTCTCTTTGAACTGTGGCATTGTGGAATTGAAAGAAGAAGTTTCCAAAAGATTGAAACTAGAGGTTGGTACATTTGATATCAAGTACATGGATGATGATAATGAATGGGTTTTGATAGCATGTGATGCAGATCTTCAGGAGTGCATGTTTGTTTCAAGATCATCCGGAGGAAGCAACATAATCCGGGTTTTGGTGCATGACATAACGTCGAATCTTGGAAGCTCTTGTGAGAGCTCAGGGGAGTGA 798 0.406 INDKGVSIREIGKDRKRTRTRSGSSEDSTNPASHGSCHGSPPNEISTVKDLFIPSNNEQCVVLRGSPESRVQPNNAFNSPTAYCLPDNVLAELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDMAPEACGTNLPGSYMAPPKQCMDTINNNNNNSVMPFAVRKEMKTVTIKATYREDIIRFRVSLNCGIVELKEEVSKRLKLEVGTFDIKYMDDDNEWVLIACDADLQECMFVSRSSGGSNIIRVLVHDITSNLGSSCESSGE 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20685g00001 265 Gene3D - 166 249 - -
Trme20685g00001 265 SUPERFAMILY CAD & PB1 domains 167 255 - -
Trme20685g00001 265 MobiDBLite consensus disorder prediction 24 46 - -
Trme20685g00001 265 ProSiteProfiles PB1 domain profile. 169 252 IPR000270 GO:0005515
Trme20685g00001 265 MobiDBLite consensus disorder prediction 1 23 - -
Trme20685g00001 265 Pfam PB1 domain 169 251 IPR000270 GO:0005515
Trme20685g00001 265 PANTHER PROTEIN NLP8 27 264 IPR045012 GO:0003700
Trme20685g00001 265 MobiDBLite consensus disorder prediction 1 46 - -
Trme20685g00001 265 CDD PB1_NLP 170 251 IPR034891 -
Trme20685g00001 265 SMART PB1_new 169 252 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20685g00001 Trme-Chr20685 551 1348 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20685g00001 15 265 NLP Transcription Factor Family AT4G24020 48.819 2.78e-62 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20685g00001 - - gmx:100786118 394.045