Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme20674g00001 | GATGAGCTGATATCTCCATGCATGTGCAAAGGAACCCAACAGTTTGTCCATCGTTCATGTCTTGATCACTGGCGCTCAGTAAAGGGTTTGCCTTTTCACACTGCACCACCTGCAAAGCGCAATTTCATCTTAGAGTTGAAACATATGAGGACAACTCCTGGCGTAAAATAA | 171 | 0.4444 | DELISPCMCKGTQQFVHRSCLDHWRSVKGLPFHTAPPAKRNFILELKHMRTTPGVK | 56 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme20674g00001 | 56 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 52 | IPR013083 | - | |
| Trme20674g00001 | 56 | CDD | RING_CH-C4HC3_MARCH | 1 | 29 | - | - | |
| Trme20674g00001 | 56 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 1 | 45 | IPR011016 | GO:0008270 | |
| Trme20674g00001 | 56 | Pfam | RING-variant domain | 2 | 26 | IPR011016 | GO:0008270 | |
| Trme20674g00001 | 56 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 44 | - | - | |
| Trme20674g00001 | 56 | SMART | ringv_2 | 1 | 31 | IPR011016 | GO:0008270 | |
| Trme20674g00001 | 56 | SUPERFAMILY | RING/U-box | 1 | 29 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme20674g00001 | 1 | 53 | C3H Transcription Factor Family | AT1G11020 | 64.815 | 1.30e-16 | 69.3 |