Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2062g00001 ATGCTACATGATAACATTTCAAATGTTTTCCGTTTTGACACCCTTATTGTTTATCAGGTGTTTCCTATCTTTAGAAAGAACTGCAGTAATGGAACACAAGTGAGGCTTCTAAGCTTGAGCTTGCATATGATGCCACTTGGGTTACTAAAATGTGTTATAACTTGGTTCTCAGTTCACTTGTCTGAACAAGAATCCAGGTCCATTCTCTATTGCATAAAGGAAGGAAATAATTCTGTCAGTAAAGCTTTTGCACCGTTGTTACATGAATGGTTCCGCATTGGTTATTCAGGTAAAACCTCAATGGAAAAATTCCGACAGGACCTGCAGCATATGTTCAAAAGAAGACACTCTTTTTCATCTGAGAAAATGAAGGAAGTTTGTGGGCATTCATTCTTAAATTCCAACAAGCAGCCACATAAAAGTTGTGGAAAGAATTGTATGTCCTATTCTTCATCTTCTGGATCCAAAAATGTGAACAAGTATGAGACACCATACTCCACAGGAATTAATATGCACATATTTTTCCCTGCCACTGCTATGAAGTTAAATCAGCATCCAAGATTTCATGCAGAAAATCCTTCTTCTGTTTCCTTTCTTAATGATCCAAAACCAATTGACCTGATCTTCTTCTTTCACAAAGCTATTAAGAAAGATTTGGATTACCTAGTTCTTGGCTCAGCTCAGTTAGAGGAACATGGTGAGTTGGTTACAGATTTCCGTAAACGATTCCATCTCATATGTTTTCTGCATCAAATCCATAGTGATGCAGAGGACGAGATAGTTTTTCCAGCCTTGGAGGCAATAGGTCAAGGCAAAAACATTAGCCTTGCCTACACCTTTGATCACAAACATGAAGTTGAGCACTTCAGTAAAATATCTCGCATTCTTGATAAGATGGCTGTATTAGATCTTTCAGTTTCTACTACTGATTCAAAGATAAGGGACAAGAGACTGATAAGGCGCTGTGATTTAATCAGGAAGCTGCAAGAAAGGTGCAAATCAATGCATAAGTTACTTTCTGATCATATAAACCGCGAGGAAATAGAAATTTGGCCAATAATTAGAGAGTTCTTCTCGAACCGGGAGCAAGGGAAGATTGTAGGATGCATGCTTGGAAGAATAAGAGCAGAAATATTACAAGATATGATACCTTGGTTAATGTCATCTTTAACACAGGAAGAGCAACATGTTTTAATGTTCTTATGGTCCATGGTTACTAAGAATACAATGTTTGATGAATGGTTAAGTGAATGGTGGAATGGGTACAGTTTAGCTAAGGCAGGAGATGGATCAAATGATGCCCCTCTAGAAAATGTTGAGCCACTTGAGATTATTTCCAAATATTTGTCTGAAGAAGTTCTTAATGAACTACAAGCAGAATCATCTGCCAACGAAAGATTAAATTTTTTGCAGAAAGATCATATTGGCAATAATTTTGAGCTGTCCAACTACAACATTGATGACAGTGTTGAGGTTAATTATGCAGAACAAAATTATAGTCAATGTTCAAAATGCACAAATCAAGTTCATGATATTAAGAAGCATGTCTGCAATGAAGTAGCAGATACCATAAATCCGATAGATCATGAAAGTCGGTCGATTCAATATTTTGACAAGTCTGGGCATTATGACCGACTTCTGAAATTGAGTCAAAATGATCTGGAGAAGGTAATAAGAAGGGTATCTCGTGACTCTTGCCTAGATCCTCAGAAAAAGTCATACATAATACAGAGCCTACTAATGAGGTTGGTCTTGTGA 1758 0.3709 MLHDNISNVFRFDTLIVYQVFPIFRKNCSNGTQVRLLSLSLHMMPLGLLKCVITWFSVHLSEQESRSILYCIKEGNNSVSKAFAPLLHEWFRIGYSGKTSMEKFRQDLQHMFKRRHSFSSEKMKEVCGHSFLNSNKQPHKSCGKNCMSYSSSSGSKNVNKYETPYSTGINMHIFFPATAMKLNQHPRFHAENPSSVSFLNDPKPIDLIFFFHKAIKKDLDYLVLGSAQLEEHGELVTDFRKRFHLICFLHQIHSDAEDEIVFPALEAIGQGKNISLAYTFDHKHEVEHFSKISRILDKMAVLDLSVSTTDSKIRDKRLIRRCDLIRKLQERCKSMHKLLSDHINREEIEIWPIIREFFSNREQGKIVGCMLGRIRAEILQDMIPWLMSSLTQEEQHVLMFLWSMVTKNTMFDEWLSEWWNGYSLAKAGDGSNDAPLENVEPLEIISKYLSEEVLNELQAESSANERLNFLQKDHIGNNFELSNYNIDDSVEVNYAEQNYSQCSKCTNQVHDIKKHVCNEVADTINPIDHESRSIQYFDKSGHYDRLLKLSQNDLEKVIRRVSRDSCLDPQKKSYIIQSLLMRLVL 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2062g00001 585 CDD Hr-like 206 352 - -
Trme2062g00001 585 Pfam Hemerythrin HHE cation binding domain 204 353 IPR012312 -
Trme2062g00001 585 Gene3D nmb1532 protein domain like 200 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2062g00001 Trme-Chr2062 557 2314 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2062g00001 19 484 C2H2 Transcription Factor Family AT3G18290 30.612 9.12e-57 204