Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20629g00001 ATGGATGCGAAGAAAGCTATGCCTCCTGATAAACTCGCTGAACTTTGGACTATTGATCCAAAGCGTGCTAAGAGAATACTTGCAAACCGGCAATCTGCTGCACGTTCAAAAGAGAGAAAGGCCCGCTATATNCAAGAACTTGAGCGCAAGGTTCAGACCCTTCAAACGGAAGCCACAACTCTCTCTGCCCAATTGACACTATATCAG 207 0.4589 MDAKKAMPPDKLAELWTIDPKRAKRILANRQSAARSKERKARYXQELERKVQTLQTEATTLSAQLTLYQ 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20629g00001 69 Pfam bZIP transcription factor 21 66 IPR004827 GO:0003700|GO:0006355
Trme20629g00001 69 Coils Coil 45 64 - -
Trme20629g00001 69 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 19 69 IPR004827 GO:0003700|GO:0006355
Trme20629g00001 69 Coils Coil 33 43 - -
Trme20629g00001 69 Gene3D - 20 69 - -
Trme20629g00001 69 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 2 69 - -
Trme20629g00001 69 FunFam probable transcription factor PosF21 20 69 - -
Trme20629g00001 69 SUPERFAMILY Leucine zipper domain 21 68 IPR046347 GO:0003700|GO:0006355
Trme20629g00001 69 SMART brlzneu 17 67 IPR004827 GO:0003700|GO:0006355
Trme20629g00001 69 CDD bZIP_plant_RF2 22 69 IPR044759 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20629g00001 Trme-Chr20629 176 1327 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20629g00001 1 69 bZIP Transcription Factor Family AT1G06850 92.754 4.31e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trme20629g00001 bZIP_1 6.4e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20629g00001 - - gmx:100815680 133.65