Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme206082g00001 ATGACTGCCCTTCATTGTGCTGCTTCTGGTGGGTCTGTTAATGTTGTTGATGCTGCGAGACTTCTTATATTGGCTGGTGCTGATGTTAATTGTGTCGATGCCAATGGAAATCGGCCTGTTGATGTCATTGTTGTTCCTCCCATGCTGCAAAGCATGAAATCTGTTCTTGAGGAACTTCTTTTGGATAATGCCTCTGACAATGGCTCTATTGGTGACTTCTCTGTTTCAGTGTCTGTTAATTCTTCTAGTTCTGGTTTGCTTGAAAATGGGATGACTTTGCCATACTCCCCCTCAGTGTCGCCGCCATCTCCTGTAGTGGGTTCGAAGTTTACGGAGAAGAAGGAATATCCAGTTGATCCATCACTTCCTGATATAAAAAACAGCATATATGCAAGTGATGA 401 0.4339 MTALHCAASGGSVNVVDAARLLILAGADVNCVDANGNRPVDVIVVPPMLQSMKSVLEELLLDNASDNGSIGDFSVSVSVNSSSSGLLENGMTLPYSPSVSPPSPVVGSKFTEKKEYPVDPSLPDIKNSIYASD 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme206082g00001 133 ProSiteProfiles Ankyrin repeat region circular profile. 1 33 - -
Trme206082g00001 133 Pfam Ankyrin repeat 1 33 IPR002110 GO:0005515
Trme206082g00001 133 ProSiteProfiles Ankyrin repeat profile. 1 34 IPR002110 GO:0005515
Trme206082g00001 133 SUPERFAMILY Ankyrin repeat 1 53 IPR036770 -
Trme206082g00001 133 Gene3D - 1 83 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme206082g00001 Trme-Chr206082 32 432 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme206082g00001 2 133 C2H2 Transcription Factor Family AT5G12850 48.529 2.76e-25 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme206082g00001 - - tpra:123893821 227.254