Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20569g00001 GATTTATTTGTAGCTGGAATAGACACAACATCGACCACAGTGGAATGGGCAATGGCAGAGTTGTTACATAACCCAAGTAAACTGACAAAGCTTAGAGAGGAAATTCAACAAATTCATGGTAAATCTGGACAAATTGAAGAATCTGATGCCTCAAATTTGCCTTATCTAAGGGCAGTAGTGAAAGAAACATTAAGGCTTCATCCACCAGTTCCATTTCTAGTACCTCACAAATCAAAAGATGATGGTGAATTAGCTGGCTACATGATACCAAAAGATGCACAAATTCTAGTAAATGTGTGGTCAATGGGAAGAGATTCAAGCATTTGGGCTAACCCAAATTCATTTGAACCTGAAAGATTTTTGAAGATTGAAACAGATTACAAAGGTAGAGATTTTGAACTTGTTCCATTTGGTGCTGGTAGAAGAATTTGTCCTGGATTACCTTTGGCTTCAAGGTCCATTCATTACATATTGGCCTCTCTTTTGTATCATTTTGACTTGAAGCTAGCTGATGAACTAAAATCTGATGATATGGATATGAGTCATATGTTTGGAGTTACATTACATAAGGCTCAACCTCTTCTAGTTGTACCAATCAAAGCTTAG 606 0.3696 DLFVAGIDTTSTTVEWAMAELLHNPSKLTKLREEIQQIHGKSGQIEESDASNLPYLRAVVKETLRLHPPVPFLVPHKSKDDGELAGYMIPKDAQILVNVWSMGRDSSIWANPNSFEPERFLKIETDYKGRDFELVPFGAGRRICPGLPLASRSIHYILASLLYHFDLKLADELKSDDMDMSHMFGVTLHKAQPLLVVPIKA 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20569g00001 201 SUPERFAMILY Cytochrome P450 1 199 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme20569g00001 201 Gene3D Cytochrome P450 1 197 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme20569g00001 201 PRINTS E-class P450 group I signature 14 40 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme20569g00001 201 PRINTS E-class P450 group I signature 134 144 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme20569g00001 201 PRINTS E-class P450 group I signature 57 75 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme20569g00001 201 PRINTS E-class P450 group I signature 98 122 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme20569g00001 201 PRINTS E-class P450 group I signature 144 167 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme20569g00001 201 FunFam Geraniol 8-hydroxylase 1 197 - -
Trme20569g00001 201 Pfam Cytochrome P450 1 187 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme20569g00001 201 PRINTS P450 superfamily signature 144 155 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme20569g00001 201 PRINTS P450 superfamily signature 58 69 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme20569g00001 201 PRINTS P450 superfamily signature 135 144 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme20569g00001 201 PRINTS P450 superfamily signature 5 22 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme20569g00001 201 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 137 146 IPR017972 GO:0005506|GO:0016705
Trme20569g00001 201 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 1 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20569g00001 Trme-Chr20569 66 671 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20569g00001 1 200 Cytochrome P450 AT1G33720 59.000 4.32e-89 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20569g00001 - - gmx:100809483 301.597