Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20557g00001 ATGCGTTGCATCAAGCTCAGGAGAATTCCGCCTCTCAAGTTGGCTTCTCTAGAAGAACTTGATCTTTCAGGGTGTTCTTGTCTTGAGAGTTTTCCACCTGTGGTAGACGGGTTGCTGGGTAAACTTAAAACCATGAGCCTTAGAAGTTGCGTCAAGCTAAGGAGTATTCCACCTCTTAAGTTGACTTCGCTAGAAAAACTTGATCTTTCACATTGTTTTAGTCTCGAGACTTTTCCACTTGTGGTGGATAGTTTTCTTGGAAAACTTAAAACCCTGCTTGTTCAAAGTTGTCACAATCTTAGGAGTATTCCACCTCTCAAGTTGGATTCACTAGAAACACTCGACCTTTCACATTGCTATAGTCTTGAGAGTTTTCCACCTGTGGTAGATGGATTGGTGGATAAGCTTAAAACCATGAGTGTTAGAAATTGCATCAAAATCAAAATTATTCCACCTCTTGTGTTGGCTTCTCTAGAAGAACTCGATCTTTCAAATTGTACTAGTCTCGAGAGTTTTTCACCTGTGG 526 0.4068 MRCIKLRRIPPLKLASLEELDLSGCSCLESFPPVVDGLLGKLKTMSLRSCVKLRSIPPLKLTSLEKLDLSHCFSLETFPLVVDSFLGKLKTLLVQSCHNLRSIPPLKLDSLETLDLSHCYSLESFPPVVDGLVDKLKTMSVRNCIKIKIIPPLVLASLEELDLSNCTSLESFSPV 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20557g00001 175 Gene3D Ribonuclease Inhibitor 1 84 IPR032675 -
Trme20557g00001 175 Gene3D Ribonuclease Inhibitor 85 175 IPR032675 -
Trme20557g00001 175 Pfam Leucine Rich Repeat 16 28 IPR001611 GO:0005515
Trme20557g00001 175 Pfam Leucine Rich Repeat 63 75 IPR001611 GO:0005515
Trme20557g00001 175 Pfam Leucine Rich Repeat 110 123 IPR001611 GO:0005515
Trme20557g00001 175 SUPERFAMILY L domain-like 4 174 - -
Trme20557g00001 175 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 61 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20557g00001 Trme-Chr20557 1 526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20557g00001 39 172 WRKY Transcription Factor Family AT4G12020 33.121 5.91e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20557g00001 - - tpra:123905727 337.421