Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20534g00001 ATTATAAAGAACTGTGACCTTGAAGAGCTGACAGAATTGGGTTCTGGTACCTTTGGGACTGTTTATCATGGAAAATGGAGGGGAACTGATGTTGCAATTAAGCGAATAACTGATAGATGTTTTGCTGGAAAGCCTTCGGAACAAGAGCGCATGAGAGACGACTTCTGGAATGAGGCAATCAAGCTTGCTGACTTGCACCATCCAAATGTGGTTGCTTTCTATGGTGTTGTGCTTGATGGCCCAGGAGATTCCGTGGCAACAGTAACTGAGTACATGACTAATGGTTCTCTCAGAAATGCCTTGCAAAAGAATGAGAGGAATCTAGACAAGCGCAGACGTCTTATGATTGCAATGGATGTGGCCTTTGGAATGGAATACCTGCATGGAAAAAATATAGTACACTTTGACTTGAAAAGCGACAACTTGCTTGTGAATCTCCGAGATCCACACCGCCCAATATGCAAGGGGATTCCCTTTAAGGCACCTAATGAGATAGATTGA 501 0.4351 IIKNCDLEELTELGSGTFGTVYHGKWRGTDVAIKRITDRCFAGKPSEQERMRDDFWNEAIKLADLHHPNVVAFYGVVLDGPGDSVATVTEYMTNGSLRNALQKNERNLDKRRRLMIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKGIPFKAPNEID 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20534g00001 166 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Trme20534g00001 166 PANTHER SERINE-THREONINE PROTEIN KINASE 3 155 - -
Trme20534g00001 166 ProSiteProfiles Protein kinase domain profile. 7 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme20534g00001 166 ProSitePatterns Protein kinases ATP-binding region signature. 13 44 IPR017441 GO:0005524
Trme20534g00001 166 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Trme20534g00001 166 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1 94 - -
Trme20534g00001 166 Gene3D Transferase(Phosphotransferase) domain 1 92 160 - -
Trme20534g00001 166 SMART serkin_6 7 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme20534g00001 166 SUPERFAMILY Protein kinase-like (PK-like) 6 145 IPR011009 -
Trme20534g00001 166 Pfam Protein tyrosine and serine/threonine kinase 9 145 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20534g00001 Trme-Chr20534 134 989 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20534g00001 1 155 MAP Kinase Kinase Kinase AT3G46920 87.097 8.34e-94 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trme20534g00001 PK_Tyr_Ser-Thr 6.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20534g00001 - - mtr:11439273 318.161