Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20530g00001 GTATACGATGTTACCTCATATGTCGAGGAACATCCAGGTGGTGATGCCATTCTAGCACATGCTGGAGATGATTCAACTGAAGGATTTTTCGGGCCACAGCATGCAACTCGAGTCTTTGACATGATTGAGGACTTTTACATTGGAGATTTGGAGCAATAG 159 0.4403 VYDVTSYVEEHPGGDAILAHAGDDSTEGFFGPQHATRVFDMIEDFYIGDLEQ 52
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20530g00001 52 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 7 14 IPR018506 GO:0020037
Trme20530g00001 52 Gene3D - 1 52 IPR036400 -
Trme20530g00001 52 PANTHER CYTOCHROME B5 1 50 - -
Trme20530g00001 52 Pfam Cytochrome b5-like Heme/Steroid binding domain 1 50 IPR001199 -
Trme20530g00001 52 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 1 51 IPR001199 -
Trme20530g00001 52 PRINTS Cytochrome B5 signature 11 25 IPR001199 -
Trme20530g00001 52 PRINTS Cytochrome B5 signature 1 11 IPR001199 -
Trme20530g00001 52 PRINTS Cytochrome B5 signature 38 50 IPR001199 -
Trme20530g00001 52 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 1 51 IPR036400 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20530g00001 Trme-Chr20530 195 681 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20530g00001 1 50 NADPH P450 reductases AT1G60660 92.000 2.68e-30 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20530g00001 - - pvu:PHAVU_004G176300g 112.849