Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme205287g00001 CCAGCAAATGCTAAAATCTCAAAAGAAGCTAAAGAAACTGTTCAAGAATGTGTTTCTGAGTTCATAAGTTTCATTACTGGTGAAGCTTCTGATAAGTGTCAAAGAGAAAAGAGAAAAACAATTAATGGTGATGATCTTCTTTGGGCTATGACAACACTTGGTTTTGAAAATTATGTTGGTCCTTTGAAAGTTTATCTTAATAATTATAGAGAAACTGAAGGAGAAAAGAGTAATTCTTCTTCTATGGTTACTAGTACTAAACAAGATGATTATGATCTTAATAATTCTTCAATTGAAGTTAATCATGATGTTGTTGTTGGTGGTGGATTTTATTCACAAGTTATTGATCATGCTCCAAAGAGATTCCAAGAGATTAATGGAGCATGGTGA 390 0.3179 PANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNNYRETEGEKSNSSSMVTSTKQDDYDLNNSSIEVNHDVVVGGGFYSQVIDHAPKRFQEINGAW 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme205287g00001 129 Gene3D Histone, subunit A 1 102 IPR009072 GO:0046982
Trme205287g00001 129 PRINTS CCAAT-binding transcription factor subunit A signature 14 32 - -
Trme205287g00001 129 PRINTS CCAAT-binding transcription factor subunit A signature 33 51 - -
Trme205287g00001 129 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Trme205287g00001 129 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 89 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trme205287g00001 129 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 2 50 IPR003958 -
Trme205287g00001 129 SUPERFAMILY Histone-fold 3 89 IPR009072 GO:0046982
Trme205287g00001 129 ProSitePatterns NF-YB/HAP3 subunit signature. 17 33 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme205287g00001 Trme-Chr205287 1 390 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme205287g00001 1 80 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.500 1.92e-48 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trme205287g00001 CBFD_NFYB_HMF 1.2e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme205287g00001 K08065 - gmx:100810059 171.785