Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme205037g00001 ATGGCCGCCGCAGCTCGTCCCCTGGTTACTGTCCATTCTCTTGAAGGAGACATGGCCACTGACTCCCCCGTAACACTTCCCATTCCCGATGTCATGCGCGCTGCCATCCGCCCTGACATAGTGAACTTCGTTCACTCCAACATCTCCAAAAACAGCCGCCAACCCTACGCTGTCAGCCGCAAAGCTGGCCACCAAACATCCGCTGAGTCCTGGGGTACCGGACGCGCTGTGTCTCGTATCCCTCGTGTCGCTGGTGGTGGTACTCACCGTGCTGGTCAAGCGGCTTTCGGAAACATGTGTCGTGGTGGTCGCATGTTCGCTCCTACCAGGATCTGGCGCCGCTGGCACCGTAAGATCAATGTCAACCAGAAACGGTATGCTGTTGTTTCCGCTATCGCTGCATCTGCTGTTCCTTCCCT 419 0.5752 MAAAARPLVTVHSLEGDMATDSPVTLPIPDVMRAAIRPDIVNFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHRKINVNQKRYAVVSAIAASAVPSL 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme205037g00001 140 Gene3D - 1 140 IPR023574 GO:0003735|GO:0005840|GO:0006412
Trme205037g00001 140 SUPERFAMILY Ribosomal protein L4 8 139 IPR023574 GO:0003735|GO:0005840|GO:0006412
Trme205037g00001 140 PANTHER 60S RIBOSOMAL PROTEIN L4 4 140 IPR045240 -
Trme205037g00001 140 Pfam Ribosomal protein L4/L1 family 28 136 IPR002136 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme205037g00001 Trme-Chr205037 16 434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme205037g00001 2 140 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 80.576 1.15e-81 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme205037g00001 K02930 - gmx:100779764 240.736