Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20495g00001 TTAGAAGATTGTTGTAGGTTGAAGAAAAGGTGTAAAGAAGATGCTAGTGAGTCTCCGGGTTCGTTTAAAAGTAGGCTTGCTGGCATTGCTACTGCTCCGCCTTGTGGGACTTCGTCTTTGATTACGTCGACTAGAGGTCTTAAGAGGAAGATAGGTTGTATTGATGTTGCTACTCAGATGGGTAGGAAGAAGAAGCTTGATGATGATTATGTTTCTGGTGAATCGATCGGGCAAGGAAAATTTGGATCGGTTTATTTGTGTAGGTCTAAGGTTAGTGGAGCGGAATATGCATGTAAAACTTTGAGAAAGGGGGAGGAGACGGTTCATCGGGAGGTTGAGATCATGCAACATTTGTCTGGACATTCTGGGGTTGTGACATTGCAAGCAGTTTATGAAGAAGCGGAAAGCTTTCATCTTGTCATGGAATTGTGCTCTGGGGGACGACTGATTGATCAAATGGTTAAGGACGGTCCATATTCAGAACAGCGGGCTGCTAACATATTAAAGGAAGTGATGTTAGTCATCAAGTACTGCCATGACATGGGAGTTGTGCATAGAGATATCAAGCCTGAGAATATTCTGCTCACAAAATCAGGAAAATTAAAGCTTGCAGATTTTGGACTCGCCATGAGAATTTCAGAAG 643 0.4277 LEDCCRLKKRCKEDASESPGSFKSRLAGIATAPPCGTSSLITSTRGLKRKIGCIDVATQMGRKKKLDDDYVSGESIGQGKFGSVYLCRSKVSGAEYACKTLRKGEETVHREVEIMQHLSGHSGVVTLQAVYEEAESFHLVMELCSGGRLIDQMVKDGPYSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTKSGKLKLADFGLAMRISE 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20495g00001 214 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Trme20495g00001 214 FunFam Aurora kinase A 62 147 - -
Trme20495g00001 214 Pfam Protein kinase domain 70 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme20495g00001 214 ProSiteProfiles Protein kinase domain profile. 70 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme20495g00001 214 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Trme20495g00001 214 Gene3D Transferase(Phosphotransferase) domain 1 61 214 - -
Trme20495g00001 214 SMART serkin_6 70 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme20495g00001 214 SUPERFAMILY Protein kinase-like (PK-like) 63 212 IPR011009 -
Trme20495g00001 214 PANTHER SERINE/THREONINE-PROTEIN KINASE 57 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20495g00001 Trme-Chr20495 1 643 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20495g00001 62 210 EF-hand Containing Proteins AT5G23580 44.025 1.38e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme20495g00001 Pkinase 9.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20495g00001 - - gmx:100812729 387.882