Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme204728g00001 TCCAATTTGCGTTGCTTCACTTATGAAGAGCTTGAAGAAGCTACCAATGGATTTGACAAAGAACTAGGAAGGGGAGCTTTTGGTATTGTTTATGAAGGAGTCATAAAAAACAACAATAGATGTTCCGAAACTCGTGTGGCAGTGAAAAAGTTGAACAGTTTTTTGTTGGATCAAGCTCATAGGGAATTCAGGAATGAATTGAATGCCATTGGTCTCACTCATCACAAGAACTTGGTTCGGTTACTTGGATTTTGTGAGGGTGGACGTGAAAGATTGCTTGTTTATGAGTACATGAGCAATGGCACTTTGGCTAGTGTTCTTTTCAATGCTGATGAGAAACAGAAACCAAGTTGGAAACTAAG 362 0.3923 SNLRCFTYEELEEATNGFDKELGRGAFGIVYEGVIKNNNRCSETRVAVKKLNSFLLDQAHREFRNELNAIGLTHHKNLVRLLGFCEGGRERLLVYEYMSNGTLASVLFNADEKQKPSWKL 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme204728g00001 120 ProSitePatterns Protein kinases ATP-binding region signature. 22 50 IPR017441 GO:0005524
Trme204728g00001 120 Gene3D Phosphorylase Kinase; domain 1 1 97 - -
Trme204728g00001 120 ProSiteProfiles Protein kinase domain profile. 16 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme204728g00001 120 Pfam Protein tyrosine and serine/threonine kinase 18 114 IPR001245 GO:0004672|GO:0006468
Trme204728g00001 120 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 119 - -
Trme204728g00001 120 SUPERFAMILY Protein kinase-like (PK-like) 3 112 IPR011009 -
Trme204728g00001 120 FunFam S-receptor-like serine/threonine-protein kinase 1 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme204728g00001 Trme-Chr204728 72 433 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme204728g00001 1 119 Receptor kinase-like Gene Family AT4G20450 39.496 2.32e-24 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme204728g00001 PK_Tyr_Ser-Thr 2.8e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme204728g00001 - - mtr:11434023 208.764