Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20453g00001 GATAGAGCTTCAATTCTTGGTGATGCTATTGAGTTTGTGAAGGATTTGCAGAAACAAGTGAAAGAACTTCAAGATGAACTTGAGGAAAATTCAGACACAGGAACTGAAAGTAATTGCATTGTTAATGGAAATAATAATCAATATGTTGGTGGTGTTCAAGTTCAACCAGAGAATAATAATACTAATAATGTTGGAAAAGCAGAACATGGTTTTCATGTTGGAAATGGCTATGTTTCAAAACAAAAGCAGGAAGATGTTGGTAATGTTACTGACAAGCAGACACAGCAGATGGAGCCACAAGTGGAAGTAGCTCAGATAGATGGAAATGAGTATTTTCTGAAGGTGTTCTGTGAGCATAGGCCTGGTGGTTTTGTGAAATTGATGGAGGCTTTGAACACTCTAGGCATGGATGTGGTACATGCCACAGTTACTAGCCACAAGGGTCTTGTCTCAAATGTTTTCAAAGTGGAGGTAAATATATAA 483 0.3768 DRASILGDAIEFVKDLQKQVKELQDELEENSDTGTESNCIVNGNNNQYVGGVQVQPENNNTNNVGKAEHGFHVGNGYVSKQKQEDVGNVTDKQTQQMEPQVEVAQIDGNEYFLKVFCEHRPGGFVKLMEALNTLGMDVVHATVTSHKGLVSNVFKVEVNI 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20453g00001 160 Coils Coil 6 33 - -
Trme20453g00001 160 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 158 - -
Trme20453g00001 160 CDD ACT_UUR-ACR-like 113 156 - -
Trme20453g00001 160 SUPERFAMILY ACT-like 109 159 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20453g00001 Trme-Chr20453 2 977 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20453g00001 1 159 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 51.534 6.12e-41 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20453g00001 - - psat:127097943 282.337