Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme204233g00001 GTTCGATTTTTCTATTCTTTTACATGTCGTGAGAACTTGTATCTTGTCATGGAGTATCTGAATGGTGGAGACTTGTATTCATTACTAAGGAATTTAGGTTGTCTAGATGAGGAAGTTGCTCGTGTATATATTGCTGAAGTGGTGCTTGCATTAGAGTATTTGCACTCACTGCGTGTGGTGCATCGTGACTTGAAGCCTGACAATTTATTGATTGCACATGATGGTCATGTCAAG 234 0.3932 VRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLRVVHRDLKPDNLLIAHDGHVK 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme204233g00001 78 Gene3D Phosphorylase Kinase; domain 1 1 23 - -
Trme204233g00001 78 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 78 - -
Trme204233g00001 78 SUPERFAMILY Protein kinase-like (PK-like) 1 78 IPR011009 -
Trme204233g00001 78 ProSitePatterns Serine/Threonine protein kinases active-site signature. 59 71 IPR008271 GO:0004672|GO:0006468
Trme204233g00001 78 Gene3D Transferase(Phosphotransferase) domain 1 24 78 - -
Trme204233g00001 78 ProSiteProfiles Protein kinase domain profile. 1 78 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme204233g00001 78 Pfam Protein kinase domain 1 78 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme204233g00001 Trme-Chr204233 58 388 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme204233g00001 1 78 AGC Kinase Gene Family AT3G17850 89.744 8.28e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Trme204233g00001 Pkinase 8.8e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme204233g00001 - - tpra:123913507 161.384