Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20420g00001 ATGGGTGGAAGTGGTAAAACCACCATCGCAAAAGCAATTTACAATAAAATTGGCATCGATTTTGAAGGTAGGAGCTTCCTTGCAAATGTTAGGGAAGTCTGGGAGCAAAGTGGTGGACCGGTTTATCTACAAAAACAACTTCTCTTTGATATATTCAAAGAAACAAAAACTAAGATCAAGAACATTGAATCAGGAATAAATATGTTAAAGGATAGACTCGTCCATAAAAGAGTACTTCTTGTATTTGATGATGTAAATACACTGGACCAACTGAAAGCTTTGTGCGGAAGTCATAAATGGCTTTGTTCAGGGAGTAGAATAATCATAACAACCAGAGATATACACATACTTAAAGGGATTAAAGTTGACCAAGTGTACAAAATGAAAGAAATGGATCAAAGTGAATCACTCGAACTTTTTAGTTGGCATGCATTCAAGCAAGCTAGTCCTGGGAAAGATTTTGCAAGAGTTTCAAGAAATGTTGTTGAGTATTCTGGGGGATTACCGCTAGCTCTGGAAGTCCTTGGGTCATATTTGTTTAATAGGGGGATAGCAGAGTGGAATTCTATATTGGAGAAACTCAAAAGAATTCCTAATGATCAAATACAAAAGAAATTAAAAATTAGTTATGATGGTTTAAATGATGACACCACAAAAGATATATTCCTCCACATAGCATGTTTCTTTATTGGGATGGATAGAAGAGATGTTATACCTATATTAAATGGTTGTGAACTTTTTGCAGAAATTGGCATAAGTGTCCTTGTTGACCGAAGCCTTGTAACTATTGATGATAGGAACAGGCTTGGAATGCATGACTTGCTGCGAGATATGGGAAGAGAAATCATTCGTGACAAGTCGCCCAAGGAGCCCGGGGAGCGTAGCAGGTTATGGTATAATAAGGACGTGCTTGATGTATTAGCAGAACAAACCGTAAGATTCATATACTTGTTTTCATCTGGACTGAAAGTATCTGAAGCTTAA 984 0.3699 MGGSGKTTIAKAIYNKIGIDFEGRSFLANVREVWEQSGGPVYLQKQLLFDIFKETKTKIKNIESGINMLKDRLVHKRVLLVFDDVNTLDQLKALCGSHKWLCSGSRIIITTRDIHILKGIKVDQVYKMKEMDQSESLELFSWHAFKQASPGKDFARVSRNVVEYSGGLPLALEVLGSYLFNRGIAEWNSILEKLKRIPNDQIQKKLKISYDGLNDDTTKDIFLHIACFFIGMDRRDVIPILNGCELFAEIGISVLVDRSLVTIDDRNRLGMHDLLRDMGREIIRDKSPKEPGERSRLWYNKDVLDVLAEQTVRFIYLFSSGLKVSEA 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20420g00001 327 Pfam NB-ARC domain 1 210 IPR002182 GO:0043531
Trme20420g00001 327 SUPERFAMILY "Winged helix" DNA-binding domain 200 307 IPR036390 -
Trme20420g00001 327 PRINTS Disease resistance protein signature 72 86 - -
Trme20420g00001 327 PRINTS Disease resistance protein signature 165 179 - -
Trme20420g00001 327 Gene3D - 130 214 IPR042197 -
Trme20420g00001 327 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 307 IPR044974 GO:0006952
Trme20420g00001 327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 225 IPR027417 -
Trme20420g00001 327 Gene3D - 1 126 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20420g00001 Trme-Chr20420 202 1185 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20420g00001 1 298 WRKY Transcription Factor Family AT5G45050 36.455 6.56e-52 182