Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20402g00001 ATGGCTGATGCTCATGATACTGATAAGAACATTGAGGTGTGGAAAATCAAGAAATTGATCAAGGCTCTTGAAGCTGCCAGAGGAAATGGGACAAGTATGATTTCCCTTATCATGCCCCCACGTGATCAGATTGCCCGTGTTACCAAGATGCTTGGCGATGAGTTTGGAACTGCTTCAAACATCAAAAGTAGGGTGAATCGACAGTCTGTGCTTGGTGCAATCACTTCTGCTCAGCAGAGGCTTAAGCTTTATAACAAGGTTCCTCCAAATGGCCTTGTTTTGTATACTGGCACAATTGTGACTGATGATGGGAAGGAGAAAAAGGTGACCATTGATTTTGAACCATTTAGACCTATCAATGCGTCTCTCTATCTTTGTGACAACAAGTTTCACACTGAAGCTCTAAACGAGCTCCTGGAATCTGATGACAAGTTTGGATTTATTGTCATGGATGGTAATGGCACTCTGTTTGGAACTTTAAGTGGTAATACAAGAGAGGTGCTTCACAAGTTCAGTGTGGATCTCCCTAAGAAACACGGAAGAGGAGGGCAATCAGCTCTACGTTTTGCCCGTCTACGTATGGAGAAGCGTCATAACTATGTGAGGAAGACTGCTGAGCTTGCAACCCAATTTTATATCAATCCTGCTACCAGTCAGCCTAATGTTTCTGGATTAATTCTTGCTGGTTCTGCTGATTTTAAAACTGAGCTTAGTCAGTCAGATATGTTTGATCCACGTCTTCAGGCAAAGATACTTAATGTTGTTGATGTATCTTATGGAGGGGAGAATGGGTTTAATCAGGCTATTGAATTATCTGCTGAAATTCTGTCCAATGTCAAGTTTATTCAGGAGAAACGATTGATTGGAAAATACTTTGAGGAAATCAGTCAGGATACGGGGAAGTATGTCTTTGGTGTTGATGATACTCTACAAGCTCTGGATGCAGGAGCTGTCGAGACACTTATTGT 968 0.4184 MADAHDTDKNIEVWKIKKLIKALEAARGNGTSMISLIMPPRDQIARVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLQALDAGAVETLIV 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20402g00001 323 FunFam Eukaryotic peptide chain release factor subunit 1 136 277 - -
Trme20402g00001 323 Pfam eRF1 domain 3 281 323 IPR005142 -
Trme20402g00001 323 SMART eRF1_1_2 4 140 IPR005140 -
Trme20402g00001 323 SUPERFAMILY Translational machinery components 142 276 - -
Trme20402g00001 323 Gene3D eRF1 domain 2 136 277 IPR042226 -
Trme20402g00001 323 Pfam eRF1 domain 2 144 277 IPR005141 -
Trme20402g00001 323 NCBIfam peptide chain release factor aRF-1 13 323 IPR004403 GO:0003747|GO:0006415
Trme20402g00001 323 Gene3D eRF1 domain 1 2 135 IPR024049 -
Trme20402g00001 323 Pfam eRF1 domain 1 18 138 IPR005140 -
Trme20402g00001 323 Gene3D - 279 323 IPR029064 -
Trme20402g00001 323 FunFam Eukaryotic peptide chain release factor subunit 1 2 135 - -
Trme20402g00001 323 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 3 323 IPR004403 GO:0003747|GO:0006415
Trme20402g00001 323 SUPERFAMILY L30e-like 278 323 IPR029064 -
Trme20402g00001 323 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 140 IPR024049 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20402g00001 Trme-Chr20402 388 1355 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20402g00001 1 323 Eukaryotic Initiation Factors Gene Family AT5G47880 93.808 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20402g00001 K03265 - pvy:116114090 616.69