Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme203846g00001 ATGCAAATTTTTGTTAAGACTTTGACGGGGAAAACCATTACTTTGGAGGTTGAGAGTTCAGATACTATCGATAATGTGAAAGCTAAGATTCAGGATAAAGAGGGTATCCCTCCGGATCAGCAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTATAACATCCAAAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAATGCAAATTTTTGTGAAGACTTTGACAGGAAAGACTATTACTTTGGAGGTTGAGAGTTCAGATACCATTGATAATGTGAAAGCGAAGATTCAAGATAAGGAAGGTATCCCTCCCGATCAGCAGAGGCTTATCTTTGCTG 367 0.4033 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme203846g00001 122 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Trme203846g00001 122 Pfam Ubiquitin family 79 122 IPR000626 GO:0005515
Trme203846g00001 122 Gene3D - 77 122 - -
Trme203846g00001 122 SUPERFAMILY Ubiquitin-like 76 121 IPR029071 -
Trme203846g00001 122 SMART ubq_7 77 122 IPR000626 GO:0005515
Trme203846g00001 122 SMART ubq_7 1 72 IPR000626 GO:0005515
Trme203846g00001 122 FunFam Polyubiquitin 3 1 76 - -
Trme203846g00001 122 ProSiteProfiles Ubiquitin domain profile. 77 122 IPR000626 GO:0005515
Trme203846g00001 122 PANTHER UBIQUITIN 77 122 - -
Trme203846g00001 122 Gene3D - 1 76 - -
Trme203846g00001 122 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Trme203846g00001 122 CDD Ubl_ubiquitin 1 76 - -
Trme203846g00001 122 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Trme203846g00001 122 FunFam Polyubiquitin-C 77 122 - -
Trme203846g00001 122 PRINTS Ubiquitin signature 11 31 IPR019956 -
Trme203846g00001 122 PRINTS Ubiquitin signature 53 74 IPR019956 -
Trme203846g00001 122 PRINTS Ubiquitin signature 32 52 IPR019956 -
Trme203846g00001 122 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme203846g00001 Trme-Chr203846 11 377 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme203846g00001 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 3.24e-51 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme203846g00001 K08770 - cit:102609871 238.039