Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme203512g00001 ATCAGGGCACAACGTAAAGGAGCAGGTTCCGTTTTCAAATCCCACACACATCACCGTAAAGGACCAGCACGTTTCCGAAGTCTCGATTTCGGAGAAAGAAACGGTTACCTTAAAGGAGTAGTAACCGACATTATCCATGACCCTGGTCGTGGTGCACCACTTGCTAAGGTTACTTTCAGACATCCATTTAGGTATAAGAAACAGAATGAACTTTTTGTTGCTGCAGAGGGACTTTATACTGGACAGTTTATTTATTGTGGGAAAAAAGCTACACTTGTTGTTGGTAATGTTTTGCCTATAAGATCTATTCCTGAAGGTGCTGTTATTTGTAATGTTGAACATCATGTTGGTGATCGTGGTGCTTTTGCTAGATGTTCTGGTGATTATGCTATTGTTATTAGTCATAATCCTGATAATGATACTTCTAGGTTTGTTC 436 0.3991 IRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKKQNELFVAAEGLYTGQFIYCGKKATLVVGNVLPIRSIPEGAVICNVEHHVGDRGAFARCSGDYAIVISHNPDNDTSRFV 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme203512g00001 145 Gene3D - 86 144 IPR014722 -
Trme203512g00001 145 Pfam Ribosomal Proteins L2, C-terminal domain 94 136 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trme203512g00001 145 MobiDBLite consensus disorder prediction 1 20 - -
Trme203512g00001 145 SMART Ribosomal_L2_C_2 92 145 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trme203512g00001 145 Pfam Ribosomal Proteins L2, RNA binding domain 9 86 IPR022666 GO:0003735|GO:0005840|GO:0006412
Trme203512g00001 145 Gene3D - 1 82 IPR012340 -
Trme203512g00001 145 SMART Ribosomal_L2_2 7 86 IPR002171 GO:0003735|GO:0005840|GO:0006412
Trme203512g00001 145 FunFam 60S ribosomal protein L2 1 82 - -
Trme203512g00001 145 SUPERFAMILY Translation proteins SH3-like domain 95 138 IPR008991 -
Trme203512g00001 145 PANTHER RIBOSOMAL PROTEIN L2 6 142 IPR002171 GO:0003735|GO:0005840|GO:0006412
Trme203512g00001 145 SUPERFAMILY Nucleic acid-binding proteins 2 93 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme203512g00001 Trme-Chr203512 1 436 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme203512g00001 1 144 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 90.972 2.74e-97 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme203512g00001 K02938 - mnt:21409345 294.278