Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20350g00001 ATGGCTACATCAACAACACCTTCATTTCTCTTACCACCACCACAACCACAACCACAACGTCATTATAATTATCACTACAAACCCATTAAACTCACTTCTTTCTCCACCCACGCCCCACGGCGGCCCAACAGGCCACGCATGGAAATCTCCTCCTCACGCCACCGCTGGGAAGACAAAGTCATAATGGGCGCAACCGGCTCCGGAAAATCACGTCTCTCCGTTGAACTCTCCACCCCCTTCTTCTCCGAAATAATCAACTCTGATAAAATGCAAGTTTACAAAGGACTCGACATCACCACCAACAAGAACCCCAACAACGATCCACATCATCTTCTCGGCAACTTTGACCCTTCTCACGGCGAGTTCTCAGCTTCAGATTTCTGCCGCCACGCCGGAGATACTATCTCAGATATAACTTCCGAGCTTTATGAACCTGATACGGATAACCGAACCGGGTTAACAAAAGCAATCGGTGTACCCGAGTTCGACCGGTGTTTTAAACAGTATCCACCGGTCGGACCCATGCAGAACAAAGGTGATAACTGGCCACACAGGGAAATCTCCTTCTCACGCCAACGCCGGAAAGACAAAGTCATCGTCATAATGGGTGCAACAGGAACCGGAAAGTCACGTCTCTCCGTTGAACTTGCCACACACTTCCATTCCGAAATAATCAACTGCGACAAAATCAAAGTCTACAAAGGACTCGACATTACCAGCGACAAGATCCCCATTCATCAACGCAACAACATTCCTCATCATCTTCTCGGAAACTTTGACCCTTCTCACGGCGAGTTTTCCCCTTCAGATTTCCGCCGCCACGCCGGTGATATTATCTCAGATATAACTGCCCGGAGAAAGCTTCCCATTATCGTTGGTGGGTCAAACTCGTTCATTCACGCTCTTCTTGTTGAACGATTTGACTCAGAGTTGAACGTGTTCGAAAACGAGTCATCAACAACATCATTATCGGAGATATCATCGGATTTAAGGTACAATTGTTGCTTTATTTGGATGGATATATCGTTTCCTGTGTTGTCGAAATATTTGCTGAAACGAGTCGACGACATGTTTGACTCGGGAATGGTGAACGAGTTAGCCGAGTTTTATGAACCGGACGCCGATAACCGAACCGGGTTAAGAAAAGCAATCGGTGTACCCGAGTTTGACAG 1172 0.4718 MATSTTPSFLLPPPQPQPQRHYNYHYKPIKLTSFSTHAPRRPNRPRMEISSSRHRWEDKVIMGATGSGKSRLSVELSTPFFSEIINSDKMQVYKGLDITTNKNPNNDPHHLLGNFDPSHGEFSASDFCRHAGDTISDITSELYEPDTDNRTGLTKAIGVPEFDRCFKQYPPVGPMQNKGDNWPHREISFSRQRRKDKVIVIMGATGTGKSRLSVELATHFHSEIINCDKIKVYKGLDITSDKIPIHQRNNIPHHLLGNFDPSHGEFSPSDFRRHAGDIISDITARRKLPIIVGGSNSFIHALLVERFDSELNVFENESSTTSLSEISSDLRYNCCFIWMDISFPVLSKYLLKRVDDMFDSGMVNELAEFYEPDADNRTGLRKAIGVPEFD 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20350g00001 390 MobiDBLite consensus disorder prediction 1 21 - -
Trme20350g00001 390 Pfam IPP transferase 312 389 - -
Trme20350g00001 390 Pfam IPP transferase 232 307 - -
Trme20350g00001 390 Pfam IPP transferase 91 140 - -
Trme20350g00001 390 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 60 140 IPR039657 -
Trme20350g00001 390 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 375 IPR027417 -
Trme20350g00001 390 Gene3D - 195 390 IPR027417 -
Trme20350g00001 390 Gene3D - 59 145 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20350g00001 Trme-Chr20350 156 1327 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20350g00001 331 390 C2H2 Transcription Factor Family AT2G27760 45.000 1.25e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20350g00001 K10760 - qsa:O6P43_025717 283.493