Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme203415g00001 GCTACTGATAGAGGTTACTGGAAGACTACTGGCAAGGATCGTGTTATCAAGAACGGCGAGGTTACTGTTGGAATGAAGAAGACTCTTGTTTATCACTTGGGTAGGGCTCCACATGGTGACAGGTCAAATTGGGTTATGCATGAATATAGGATGATTGATGAATCACTGGCCAAAGCTGGAGTGCAGGATGCATATGTACTGTGTAGGATATTTGAGAAGAGTGGTTCGGGGCCGAAGAATGGGGAGAAATATGGGGCACCCTTTGTTGAAGCGGAATGGGAGAATGTTGTT 291 0.457 ATDRGYWKTTGKDRVIKNGEVTVGMKKTLVYHLGRAPHGDRSNWVMHEYRMIDESLAKAGVQDAYVLCRIFEKSGSGPKNGEKYGAPFVEAEWENVV 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme203415g00001 97 Gene3D NAC domain 1 76 IPR036093 GO:0003677|GO:0006355
Trme203415g00001 97 SUPERFAMILY NAC domain 1 73 IPR036093 GO:0003677|GO:0006355
Trme203415g00001 97 Pfam No apical meristem (NAM) protein 2 51 IPR003441 GO:0003677|GO:0006355
Trme203415g00001 97 ProSiteProfiles NAC domain profile. 1 73 IPR003441 GO:0003677|GO:0006355
Trme203415g00001 97 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme203415g00001 Trme-Chr203415 2 436 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme203415g00001 1 94 NAC Transcription Factor Family AT5G04410 75.789 5.27e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme203415g00001 NAM 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme203415g00001 - - mtr:25484826 192.971