Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20317g00001 GTTGATATGCCTGATATGGATGGATTTAAGCTCCTTGAGATGGTGGGACTTGAAATGGACTTACCTGTCATTATGTTGTCGGGACATAGGGATAGAAACATGGTGTTCAAGGGTATTTCACATGGTGCATGTGACTATTTGCTGAAACCTGTTCGACTTGAAGAGCTCCAGAACATATGGCAACACGTAGTCCGAAAACAAACAACTGCTTCCAAGGATCAGAATAAGGCTTCCAATGAGGATAGGAACCCTAATATTTCCGGGGGAAATAGTCAAAACGTATTGGAGAACATTGCTGAACAGAATAAAAACCTAGGTAAAAGAAGGAAGGACCAAGCTGAGGAGGAAGAAAATGAAGAAGGTGAAGGGACTGGAGATGAGGATGACCCCTCATTGCAGAAGAAACCTCGTGTGGTTTGGTCTGTTGATCTGCATAGGAAATTTGTTTTTGCGGTTAATCAACTCGGCTTGGAAAAGGCTGTTCCGAAGAAAATACTTGACCTGATGAATGATGAAAGGCTTACTAGGGAAAATGTGGCCAGCCATCTGCAGGTTTATATTCTTAATGTTGCAGCCACCATAATTCTTGTGTTTAGTCTTTTACAATCATGA 612 0.4183 VDMPDMDGFKLLEMVGLEMDLPVIMLSGHRDRNMVFKGISHGACDYLLKPVRLEELQNIWQHVVRKQTTASKDQNKASNEDRNPNISGGNSQNVLENIAEQNKNLGKRRKDQAEEEENEEGEGTGDEDDPSLQKKPRVVWSVDLHRKFVFAVNQLGLEKAVPKKILDLMNDERLTRENVASHLQVYILNVAATIILVFSLLQS 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20317g00001 203 Coils Coil 95 116 - -
Trme20317g00001 203 SUPERFAMILY Homeodomain-like 133 189 IPR009057 -
Trme20317g00001 203 SUPERFAMILY CheY-like 2 72 IPR011006 -
Trme20317g00001 203 Pfam Response regulator receiver domain 1 58 IPR001789 GO:0000160
Trme20317g00001 203 FunFam Two-component response regulator 131 193 - -
Trme20317g00001 203 MobiDBLite consensus disorder prediction 67 133 - -
Trme20317g00001 203 MobiDBLite consensus disorder prediction 67 100 - -
Trme20317g00001 203 Gene3D - 131 192 - -
Trme20317g00001 203 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 181 IPR045279 GO:0009736
Trme20317g00001 203 Gene3D - 1 92 - -
Trme20317g00001 203 ProSiteProfiles Response regulatory domain profile. 1 64 IPR001789 GO:0000160
Trme20317g00001 203 NCBIfam myb-like DNA-binding domain, SHAQKYF class 135 188 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20317g00001 Trme-Chr20317 1 849 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20317g00001 1 188 Response Regulator Gene Family AT2G25180 60.106 1.81e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trme20317g00001 Response_reg 7.7e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20317g00001 K14491 - vvo:131594764 288.885