Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2030g00001 GTGAAGGAAATAGGAGTTTTGTTGTTGCATATATTGACTGGAAGAGGAAATTGGGGGACAATTGATATGGAGACCATTTATGATGAGATTGGTGAAGAATGGCCGTTTGATGTAGCAAGAGAACTTTTGGACTTAGCAATGAGGTGCATGTCCAATGTAGAAATGAGTATAAGAAGAGTCCTGGAAGAACTCAATGAAATCAAAAGAAAGGGTTGTGACTCCATTAAAGTGCCTAACATTTTCCTTTGCCCAATCCAAAAGATGGTAATGAGAAATCCATACATAGCAGCAGATGGATTTTCTTATGAGCTGGAAGCAATAGAAGAATGGTTGCAATCTGGAAATGACATATCACCCAAAAGCTTGAGGCTGAAGAATACATTACTTATTCCTAATCATAACCTCCGTTCCCTAATTCAGTATTGGCATAGAAAGAGATCAGCTACTCAAGTTGTAAAATAA 462 0.3766 VKEIGVLLLHILTGRGNWGTIDMETIYDEIGEEWPFDVARELLDLAMRCMSNVEMSIRRVLEELNEIKRKGCDSIKVPNIFLCPIQKMVMRNPYIAADGFSYELEAIEEWLQSGNDISPKSLRLKNTLLIPNHNLRSLIQYWHRKRSATQVVK 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2030g00001 153 CDD RING-Ubox_WDSUB1-like 78 132 - -
Trme2030g00001 153 PANTHER OS02G0152300 PROTEIN 2 140 - -
Trme2030g00001 153 SMART Ubox_2 80 142 IPR003613 GO:0004842|GO:0016567
Trme2030g00001 153 SUPERFAMILY RING/U-box 74 148 - -
Trme2030g00001 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 151 IPR013083 -
Trme2030g00001 153 ProSiteProfiles U-box domain profile. 76 149 IPR003613 GO:0004842|GO:0016567
Trme2030g00001 153 Coils Coil 50 70 - -
Trme2030g00001 153 Pfam U-box domain 77 146 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2030g00001 Trme-Chr2030 260 1156 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2030g00001 1 148 U-box Gene Family AT5G65500 42.308 1.65e-39 139