Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20284g00001 ATGGAGCATAATAATAATGAGAAAATTCCATCAGCACCAAATGGTAGTAAAAAGCATAAGAAGTCCACCCTAACATGTTTCGGTCCCCAAGAATGGAACTTAGAAGATGGATCTCAACCCACCGTCACTTGTTCATTAATGCCACCCCCTCCTCCTATTCCTCTCGCAAAAAAGATAGGAGCTGAGTTTATAGGGACATTGATTCTCATATTTTCTGGGACAGCCACTGCTATTGTGAACCAAAAAACAAATGGGTCGGAGACTCTGATTGGATGTGCTACCTCTAGTGGTCTTGCTGTTATGATCATCATCCTCGCCACTGGCCACATCTCCGGTGCTCATCTCAACCCTGCAGTCACCATTTCCTTTGCTGCATTAAGGCAC 384 0.4453 MEHNNNEKIPSAPNGSKKHKKSTLTCFGPQEWNLEDGSQPTVTCSLMPPPPPIPLAKKIGAEFIGTLILIFSGTATAIVNQKTNGSETLIGCATSSGLAVMIIILATGHISGAHLNPAVTISFAALRH 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20284g00001 128 Pfam Major intrinsic protein 56 127 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme20284g00001 128 ProSitePatterns MIP family signature. 114 122 IPR022357 -
Trme20284g00001 128 PRINTS Major intrinsic protein family signature 96 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme20284g00001 128 PRINTS Major intrinsic protein family signature 57 76 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme20284g00001 128 PANTHER AQUAPORIN NIP2-1 31 128 IPR034294 -
Trme20284g00001 128 MobiDBLite consensus disorder prediction 7 23 - -
Trme20284g00001 128 MobiDBLite consensus disorder prediction 1 23 - -
Trme20284g00001 128 Gene3D Glycerol uptake facilitator protein. 52 128 IPR023271 -
Trme20284g00001 128 SUPERFAMILY Aquaporin-like 55 127 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20284g00001 Trme-Chr20284 877 1357 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20284g00001 26 128 Major Intrinsic Protein MIP AT1G80760 75.000 4.35e-49 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20284g00001 K09874 - gmx:100815637 173.326