Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20278g00001 GCTGCAATGTTTGACATGGAGTATGCAAGATGGCTTGAAGAAGATCAACGACATTTGGTGGAACTTAGGGCCGGGCTGCAGGCGGCATTACCGGATAATGAACTGAGAGTGATTGTGGACGGATATTTGTATCATTATGATGAGCTTTTCCGATTGAAGGGTGTGGCTGTTAAATCAGATGTGTTTCACCTCATTAAAGGCATTTGGGCTTCTCCTGCTGAAAGACCCTTCATTTGGATAGGTGGTTTCAAACCCTCAGAACTCATCACGATGTTGACACAACAGTTGGAGCCCCTAGCGGAGCAGCAAATAGCAGGGATAATGGATCTACGGCAATCGGCACATGAAGCAGAAGAAGCTCTTTCTAAACGCCATGAACAGCTCCACCACGCTATTGTTGACACCATCGCCGGAGGGGATGTCATTGACGGTGTTCAACAAATGGTTGCCGCCATGGCTAAAATTTCCAACCTTGAAGGATTTGTCTATCAGGTAAACAACTTATTATATCTACAATACATAAATTAA 528 0.447 AAMFDMEYARWLEEDQRHLVELRAGLQAALPDNELRVIVDGYLYHYDELFRLKGVAVKSDVFHLIKGIWASPAERPFIWIGGFKPSELITMLTQQLEPLAEQQIAGIMDLRQSAHEAEEALSKRHEQLHHAIVDTIAGGDVIDGVQQMVAAMAKISNLEGFVYQVNNLLYLQYIN 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20278g00001 175 ProSiteProfiles DOG1 domain profile. 1 175 IPR025422 GO:0006351|GO:0043565
Trme20278g00001 175 PANTHER TRANSCRIPTION FACTOR TGA9 1 168 - -
Trme20278g00001 175 Pfam Seed dormancy control 18 93 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20278g00001 Trme-Chr20278 254 1131 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20278g00001 1 168 bZIP Transcription Factor Family AT1G08320 61.310 4.21e-75 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20278g00001 K14431 - gmx:100101904 253.447