Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme202680g00001 ATGCGAGAAGTTCTACTTGAAGCTCCTGGTTTGTTAGTTCTTGATGAAGGACACACACCAAGAAATCAAAGAAGTCATATTTGGAAGGTGTTGACGAAGAGTCAAACGCCGAAGCGAATCATCCTTTCCGGAACTCCATTCCAGAATAATTTCTCGGAGCTTTACGGCACTTTGAGCTTAGTCAAGCCTTCTTTTCCTAACATGATACCGCCTGAGCTAAAAACGTTTTGTCATAAGCAGGGACAAAGATCATCTAAAAAATGGGGTTGGGAAGCTGATTCAGGCAACATAGAAAGAGACCCTTCTGATGATGATAAGATCCAGAAGTTGAAATTGCTAATGGATCCCTTTGTTCA 356 0.4157 MREVLLEAPGLLVLDEGHTPRNQRSHIWKVLTKSQTPKRIILSGTPFQNNFSELYGTLSLVKPSFPNMIPPELKTFCHKQGQRSSKKWGWEADSGNIERDPSDDDKIQKLKLLMDPFV 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme202680g00001 118 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 64 IPR014001 -
Trme202680g00001 118 Gene3D - 3 118 IPR038718 -
Trme202680g00001 118 MobiDBLite consensus disorder prediction 80 103 - -
Trme202680g00001 118 Pfam SNF2-related domain 12 117 IPR000330 GO:0005524|GO:0140658
Trme202680g00001 118 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 118 IPR044567 GO:0080188
Trme202680g00001 118 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 76 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme202680g00001 Trme-Chr202680 82 437 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme202680g00001 12 79 RAD5 or RAD16-like Gene Family AT1G50410 33.824 3.37e-07 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme202680g00001 SNF2_N 9.9e-12 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme202680g00001 K10875 - lja:Lj1g3v3608470.1 156.377