Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2025g00001 ATGGAAACCAAAAATGATAGAGGACCATTCCTTGTTGTCGTACCCTCTTCAGTTCTACCCGGTTGGGAGTCAGAGATAAACTTTTGGGCTCCTAGTATTCATAAAATTGTCTATGCTGGACTGCCAGAGGAGAGACGTCGGTTATTCAAGGAAAGGATTGTTCACCAGAAATTTAATGTTCTTTTGACAACGTATGAATATCTGATGAACAAGCATGATAGACCAAAGCTGAGCAAAGTACATTGGCATTATATAATAATTGATGAAGGCCACCGCATAAAGAATGCTTCTTGCAAGTTGAATGCTGAATTGAAACACTACCAGAGCTCTCACAGATTGCTGTTAACTGGAACACCATTGCAGAACAATCTTGAAGAACTATGGGCACTACTTAACTTCTTGTTGCCTAACATATTCAATTCATCGGAGGACTTCTCTCAATGGTTTAATAAACCATTTGAGAGTACTGGAGATAACTCACCCGATGAAGCTTTACTGTCTGAGGAGGAGAATCTCTTGATCATAAATCGTCTGCACCAAGTTTTGAGACCATTTGTACTTCGGAGGCTTAAACACAAGGTTGAAAATCAGCTGCCTTCGAAGATTGAGAGACTTATAAGATGTGAGGCTTCTTCATATCAAAAACTTTTAATGAAGAGAGTGGAAGATAATCTTGGTGCTATTGGCACTTCAAAGGCTCGGTCAGTTCACAACTCTGTCATGGAGCTTCGAAATATATGCAATCATCCATATCTCAGCCAGCTTCACACAGAGGAGGCCATTAGTTTGGTGTAG 795 0.4025 METKNDRGPFLVVVPSSVLPGWESEINFWAPSIHKIVYAGLPEERRRLFKERIVHQKFNVLLTTYEYLMNKHDRPKLSKVHWHYIIIDEGHRIKNASCKLNAELKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESTGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENQLPSKIERLIRCEASSYQKLLMKRVEDNLGAIGTSKARSVHNSVMELRNICNHPYLSQLHTEEAISLV 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2025g00001 264 Pfam SNF2-related domain 7 252 IPR000330 GO:0005524|GO:0140658
Trme2025g00001 264 PANTHER SNF2/RAD54 HELICASE FAMILY 1 259 - -
Trme2025g00001 264 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 137 IPR014001 -
Trme2025g00001 264 SMART ultradead3 1 148 IPR014001 -
Trme2025g00001 264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 253 IPR027417 -
Trme2025g00001 264 Gene3D - 1 214 IPR038718 -
Trme2025g00001 264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 189 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2025g00001 Trme-Chr2025 214 2689 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2025g00001 8 252 RAD5 or RAD16-like Gene Family AT5G22750 28.839 5.90e-24 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme2025g00001 SNF2_N 6.9e-58 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2025g00001 - - tpra:123923116 498.434