Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20223g00001 ATGGGGAGAGCACCATGTTGTGATGAAAGTGGTTTGAAGAAAGGACCTTGGACACCAGAAGAGGATAGAATATTGGTGGATCATATTGAGAAACATGGCCATGGAAGTTGGAGAGCACTTCCAAAGCTAGCTGGATTGAACAGATGTGGTAAGAGTTGCAGATTAAGGTGGACTAACTATTTAAGACCTGATATCAAAAGAGGAAAATTCACTGAGGAAGATGAGAAAACCATCATCAATTTACATGCTGTTCTTGGGAATAAGTAA 267 0.4007 MGRAPCCDESGLKKGPWTPEEDRILVDHIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEDEKTIINLHAVLGNK 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20223g00001 88 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trme20223g00001 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 88 IPR017930 -
Trme20223g00001 88 SMART sant 13 63 IPR001005 -
Trme20223g00001 88 Gene3D - 11 67 - -
Trme20223g00001 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Trme20223g00001 88 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 88 - -
Trme20223g00001 88 SUPERFAMILY Homeodomain-like 15 88 IPR009057 -
Trme20223g00001 88 CDD SANT 16 61 IPR001005 -
Trme20223g00001 88 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trme20223g00001 88 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20223g00001 Trme-Chr20223 729 995 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20223g00001 1 88 MYB Transcription Factor Family AT5G16770 85.227 6.38e-56 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme20223g00001 Myb_DNA-binding 3.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20223g00001 K09422 - tcc:18599533 182.185