Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme202176g00001 TATGGTGAGGTTAAGGAAGCAGTGATAATGAAGGATCGGACAACTGGTAGAGCCCGTGGATTTGGTTTTGTTGTTTTCATCGACCCAGCTGTTGCAGAAATTGTCATCAAAGAGAAGCATAACATCGATGGAAGGATGCCGGGATTCGAACTTGGGTTCTCCCGAGCATTTATTCCTTAA 180 0.4444 YGEVKEAVIMKDRTTGRARGFGFVVFIDPAVAEIVIKEKHNIDGRMPGFELGFSRAFIP 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme202176g00001 59 Gene3D - 1 54 IPR012677 -
Trme202176g00001 59 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 56 IPR000504 GO:0003723
Trme202176g00001 59 SUPERFAMILY RNA-binding domain, RBD 1 45 IPR035979 GO:0003676
Trme202176g00001 59 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 41 IPR000504 GO:0003723
Trme202176g00001 59 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme202176g00001 Trme-Chr202176 2 319 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme202176g00001 1 42 Eukaryotic Initiation Factors Gene Family AT1G71770 40.476 1.27e-06 41.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme202176g00001 K14411 - gmx:100799330 89.7373