Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20208g00001 GTTACTTATGGTGAGCTACATGAAGCAACCAATGGCTTTTCTTCATCCAATTTGATTGGAACAGGAAGCTTTGGTTCTGTTTACAAAGGGTCTCTTCCTTATTTTGAAAGACTTGTTGCTGTAAAGGTATTGAACCTTGAAGCACGTGGAGCAGCAAAAAGTTTCATGGCGGAATGTAATGCTCTTGGAAAGATGAAGCATCGGAATCTTGTCAAGATCCTAACTTGTTGCTCAAGTATTGATTATAATGGTGAAGATTTCAAGGCTATTGTTTTTGAGTTTATGCCTAATGGTAGTCTAGAAAAGTTGTTGCACAACATTGAAGGCTCTGAAAATCATAATCTCAACTTTAAACAAAGGATAGACATTGCCCTTGATGTAGCTCATGCACTTGATTATCTTCACAATGATACAGAGCAAGCCGTAGTTCACTGTGATATTAAGCCAAGCAATGTTCTTCTTGACGACGACATTGTAGCCCACTTGGGAGACTTTGGCTTAGCTAGGTTCATTCATGGAGCCAAAACACATTCAAATAATGATCAAGTTATTTCCTCCACAATTAAGGGAACTATAGGATATGTTCCTCCTGAATATGGAGCAGGTGGTCCAATTTCACCCGAAGGAGATATCTACAGTTATGGGATTCTTCTATTGGAAATGGTCACTGGAAAGAGACCAACAAATTATATGTTTAATGAGAATCTAAATCTACACAAACTCTGTAAGATGAAAATTCAAGAAGGAATTCTGGAAATAGTAGATTCACATTTGCTTGTGCCATTTGTTGAAGATCAGTCACGAGTTATGGAAAACAACATAAGGGNGTGTCTAGTGATGTTTGTTAACATAGGAATTGCTTGTTCTGAAGAATTTCCTACTCAACGAATGCTCATTAAAGATGTTATAGTAAAGTTGCTTGAAATTAAACAAAAGTTGTGCTGCTAG 948 0.3713 VTYGELHEATNGFSSSNLIGTGSFGSVYKGSLPYFERLVAVKVLNLEARGAAKSFMAECNALGKMKHRNLVKILTCCSSIDYNGEDFKAIVFEFMPNGSLEKLLHNIEGSENHNLNFKQRIDIALDVAHALDYLHNDTEQAVVHCDIKPSNVLLDDDIVAHLGDFGLARFIHGAKTHSNNDQVISSTIKGTIGYVPPEYGAGGPISPEGDIYSYGILLLEMVTGKRPTNYMFNENLNLHKLCKMKIQEGILEIVDSHLLVPFVEDQSRVMENNIRXCLVMFVNIGIACSEEFPTQRMLIKDVIVKLLEIKQKLCC 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20208g00001 315 SUPERFAMILY Protein kinase-like (PK-like) 2 305 IPR011009 -
Trme20208g00001 315 Gene3D Transferase(Phosphotransferase) domain 1 95 314 - -
Trme20208g00001 315 ProSiteProfiles Protein kinase domain profile. 13 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme20208g00001 315 FunFam LRR receptor-like serine/threonine-protein kinase EFR 1 94 - -
Trme20208g00001 315 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Trme20208g00001 315 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 95 315 - -
Trme20208g00001 315 Gene3D Phosphorylase Kinase; domain 1 1 94 - -
Trme20208g00001 315 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Trme20208g00001 315 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 311 - -
Trme20208g00001 315 Pfam Protein kinase domain 15 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme20208g00001 315 SMART serkin_6 13 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20208g00001 Trme-Chr20208 3 1196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20208g00001 1 312 Receptor kinase-like Gene Family AT3G47570 50.316 1.23e-101 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trme20208g00001 Pkinase 8.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20208g00001 - - mtr:25482466 511.916