Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20189g00001 ATGAAGGGCTATGAACCAAGGTCAAGTTCCTCTTGTGCAGCCTGCAAATTTCTCAAAAGAAGATGCATACCAAATTGTATATTTGCACCATACTTTCGTGCCGACGAGTGCAAGAAATTCGCGAAAGTTCACAAAGTATTTGGAGCAAGCAATGTAAGCAAGATCCTCATTGAAGTGCCAGAGGAACAAAGAGAAGAAACTGTGAATTCTTTGGCTTATGAAGCTGATGCAAGGCTTAGAGATCCTGTTTATGGATGCATAGGTGCTATAGCACTTTTGCAAAGGAAAATGATTGAACTTCAACATGATCTTGCCATTGCTAAAGATCGTCTCGCTCGTTGCGCAGCCGCTGCTGCTGCTACTCCTTCTTCTTCTTCTTTTTCTAATGATATGTCGAATTCGAATGTTAGTTTGCCACCTTTTCCTGAGTTTTACAGTTGCAGTGATTTTAATGATAATTTTAGCCACAGTTCTTCATCTCAATCGTTTAGTCGAAATGAAACAGGTGATGATTTCCTTCAAATCCCTTATATATTTTGA 540 0.3944 MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRADECKKFAKVHKVFGASNVSKILIEVPEEQREETVNSLAYEADARLRDPVYGCIGAIALLQRKMIELQHDLAIAKDRLARCAAAAAATPSSSSFSNDMSNSNVSLPPFPEFYSCSDFNDNFSHSSSSQSFSRNETGDDFLQIPYIF 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20189g00001 179 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Trme20189g00001 179 Coils Coil 90 110 - -
Trme20189g00001 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 147 - -
Trme20189g00001 179 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20189g00001 Trme-Chr20189 624 1163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20189g00001 1 111 AS2 family AT3G11090 79.279 6.21e-64 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme20189g00001 LOB 1.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20189g00001 - - gmx:100777635 260.381