Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme201889g00001 AATCCTAAAGAACTTGATTTTACTAACAGTGTGGAGATAACAAAGGGGACTTTCTGTAGTGCGTTGTGGCATGGGACTGAGGTTGCGGTAAAAAAGCTCGGGGAGGATGTGATTAGTGATGAGGAGAAAGTGAACGCTTTCAGAGATGAGCTTGCTCTCTTCCAGAAGATTCGGCATCCAAATGTAGTCCAATTTCTTGGTGCTGTGATACAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAG 252 0.4325 NPKELDFTNSVEITKGTFCSALWHGTEVAVKKLGEDVISDEEKVNAFRDELALFQKIRHPNVVQFLGAVIQSSPMMIVTEYLPK 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme201889g00001 84 ProSiteProfiles Protein kinase domain profile. 1 84 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme201889g00001 84 Pfam Protein tyrosine and serine/threonine kinase 16 83 IPR001245 GO:0004672|GO:0006468
Trme201889g00001 84 FunFam serine/threonine-protein kinase STY46-like 1 83 - -
Trme201889g00001 84 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 14 84 - -
Trme201889g00001 84 SUPERFAMILY Protein kinase-like (PK-like) 15 83 IPR011009 -
Trme201889g00001 84 Gene3D Phosphorylase Kinase; domain 1 4 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme201889g00001 Trme-Chr201889 2 418 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme201889g00001 1 84 MAP Kinase Kinase Kinase AT3G58760 75.000 3.40e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Trme201889g00001 PK_Tyr_Ser-Thr 2.2e-12 CL0016