Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20172g00001 ATGAGGACATATTTTGAACAATTTGGTGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACCGGAAAATCTAAAGGATATGGATTTGTAACATTTCGTGATCCAGAATCAGCTAGAAGAGCTTGTACTGATCCAAATCCAGTAATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTAGGACGTCCTAGACCATCACCACCAAGAG 214 0.3832 MRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACTDPNPVIDGRRANCNIASLGRPRPSPPR 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20172g00001 71 PANTHER BOULE-RELATED 1 70 - -
Trme20172g00001 71 Gene3D - 1 64 IPR012677 -
Trme20172g00001 71 SMART rrm1_1 1 58 IPR000504 GO:0003723
Trme20172g00001 71 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 43 IPR000504 GO:0003723
Trme20172g00001 71 SUPERFAMILY RNA-binding domain, RBD 2 69 IPR035979 GO:0003676
Trme20172g00001 71 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 62 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20172g00001 Trme-Chr20172 19 341 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20172g00001 1 61 C2H2 Transcription Factor Family AT2G19380 42.623 1.13e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20172g00001 K25006 - gmx:100787086 149.058