Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20154g00001 ATGCAGCAAGATGAAGGCGTAAGTTCCTCCAGTAGAAGCAAAGAAATAGCAACTTCTTGCACTAAGAAGCATCAGGCATCACCCGAAATCCTTGATGTTAATAAATTGATGGAGCAAGAAAAGGTTTGTGAGTATGCTGAAGACGTTGGTGGAAAAACTGATTTTTTGGATGACGAAACAGAGGCTCCAGATGACAAGTGTGAATATGAGTTGGGAGTGGCTCCTGACGAAGAATTGGTTCATCTTTCAAAGAAATTAGACACCTCAGCAGAAGAGAAGTTAGATGCAGTTGACCATGATAAAAAATGTGAAGCAATGCTTCCTAAAAAGGTCAGTAATAAAACTGAAAAACAGAAGCTACCTTCACTGTTAGACTCAACCTCAAAGTTAAAAGTAAAGCATCAAGCTACAAAACGTCCTGCAAGTAAAACCAAGAAGACCACAGTTGCAAAGAAATTAGCGAAATCTGAAGAGGCAGCAGTATCTGGGGAGAAGATTCCTAATGAGACAAAGGATGAGGCAGAAATAAAAATCCTGAAAGAAATGTCTGTACATTCTGATATAAGTGAGAACTCAAATGTACCAAGAAATAAGCCAGATAATTTTGTTGAAGAGGAGAAGGAGAATAGACCAAATGATAGAGAACATGGTTTAGTGGATAGAACAAGTGTTGGAAATCAAACTACTAAATCTAGTGTTAAGCCAGCAAATATCATCAAATCTAAGAAAATGAAGCACAATTCATCTATATCTGAATTTAAAGCAAGAGCAAAAACTGAAGCCACATGTTTTATATTAAGTGGGCATCGCTTCCAGAGAAAGGAGTATCAACAAGTAATCAAGCGTTTGAAAGGAAGGGTTTGCCGTGATTCTCATCAGTGGTCATATCAGGCAACACACTTCATAGCCCCAGACCCTATAAGGAGGACAGAGAAATTTTTTGCTGCTAGTGCATCAGGAAGGTGGATTCTTAAAACTGATTTCTTAACTGCCAGTAGTCAGGCAGGAAAATTATTGCCCGAGGAGCCTTATGAGTGGCACAAAAATGGTCTCAGCGAGGATGGTGCCATCAATATGGAGGCTCCAAGAAAGTGGCGGCTGTTGAAAGAAAGAACAGGTCATGGTGCCTTCTATGGGATGCGTATTGTT 1149 0.3969 MQQDEGVSSSSRSKEIATSCTKKHQASPEILDVNKLMEQEKVCEYAEDVGGKTDFLDDETEAPDDKCEYELGVAPDEELVHLSKKLDTSAEEKLDAVDHDKKCEAMLPKKVSNKTEKQKLPSLLDSTSKLKVKHQATKRPASKTKKTTVAKKLAKSEEAAVSGEKIPNETKDEAEIKILKEMSVHSDISENSNVPRNKPDNFVEEEKENRPNDREHGLVDRTSVGNQTTKSSVKPANIIKSKKMKHNSSISEFKARAKTEATCFILSGHRFQRKEYQQVIKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAASASGRWILKTDFLTASSQAGKLLPEEPYEWHKNGLSEDGAINMEAPRKWRLLKERTGHGAFYGMRIV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20154g00001 383 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 89 383 IPR044254 -
Trme20154g00001 383 MobiDBLite consensus disorder prediction 1 27 - -
Trme20154g00001 383 SUPERFAMILY BRCT domain 263 350 IPR036420 -
Trme20154g00001 383 MobiDBLite consensus disorder prediction 150 174 - -
Trme20154g00001 383 MobiDBLite consensus disorder prediction 133 149 - -
Trme20154g00001 383 ProSiteProfiles BRCT domain profile. 261 346 IPR001357 -
Trme20154g00001 383 MobiDBLite consensus disorder prediction 108 174 - -
Trme20154g00001 383 Pfam BRCA1 C Terminus (BRCT) domain 266 331 IPR001357 -
Trme20154g00001 383 Gene3D BRCT domain 255 372 IPR036420 -
Trme20154g00001 383 MobiDBLite consensus disorder prediction 1 25 - -
Trme20154g00001 383 CDD BRCT_TopBP1_rpt7 263 336 - -
Trme20154g00001 383 MobiDBLite consensus disorder prediction 199 220 - -
Trme20154g00001 383 MobiDBLite consensus disorder prediction 186 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20154g00001 Trme-Chr20154 9 1284 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20154g00001 260 383 Core DNA Replication Machinery Family AT4G02110 73.387 7.34e-62 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20154g00001 K10728 - gmx:100799144 429.483