Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20139g00001 GGCCAATATGAGATCATATCATTATCAGGTGATATGCAGCTATCTGAAAATAATGGTGAACAAAACAGAACAAGCAGTTTATACGTTTCCCTTGCTGGGGCTGATGGACGAGTTTTGGGTGGTGCAGTTGCTGGAATGCTAACTGCAGCGTCGGCTGTACAGGTCATTGTGGGTAGCTTTATAATGGATCAGAAAAAGTCAAGCTCGAGTATGGTGAAATCTGGGCCTTCTTCAGCACCAACTTCCCAAATGTTGAACTTCGGAGCTCCTACGACTCCAACTAGTCCCACCTCTCAAGGACCTTCAACCGAGTCCTCGGAGGAAAATGATCACAATAGTAACTTTAGTAGGGGTCCTGGAATCTACAATAATGCTAATCAGCCTGTTCATAATAATATGCAGCAGATGTACCACCATCCACTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNAGTGCAGAAGCAGGGTATTTGTTGGATGA 498 0.4036 GQYEIISLSGDMQLSENNGEQNRTSSLYVSLAGADGRVLGGAVAGMLTAASAVQVIVGSFIMDQKKSSSSMVKSGPSSAPTSQMLNFGAPTTPTSPTSQGPSTESSEENDHNSNFSRGPGIYNNANQPVHNNMQQMYHHPLXXXXXXXXXXXXXXXXCRSRVFVG 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20139g00001 165 MobiDBLite consensus disorder prediction 66 138 - -
Trme20139g00001 165 CDD DUF296 1 60 IPR005175 -
Trme20139g00001 165 ProSiteProfiles PPC domain profile profile. 1 82 IPR005175 -
Trme20139g00001 165 Pfam Plants and Prokaryotes Conserved (PCC) domain 1 60 IPR005175 -
Trme20139g00001 165 SUPERFAMILY AF0104/ALDC/Ptd012-like 1 61 - -
Trme20139g00001 165 Gene3D - 1 73 - -
Trme20139g00001 165 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 114 IPR039605 GO:0003680
Trme20139g00001 165 MobiDBLite consensus disorder prediction 66 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20139g00001 Trme-Chr20139 184 1095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20139g00001 1 124 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 47.287 3.36e-23 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20139g00001 - - gmx:100789717 164.081