Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20129g00001 GGTTCCTCTGATCCTTCTGATGAGGATGATGAATTAGGTCCTTGTGAACAAAGCACAAATCCACTTGATACCAAACGCCTTAGAAGGAAGGTTTCTAATCGCGAATCAGCCAGGAGGTCAAGGCAAAGAAAACATGCGCATTTGTCTGAACTTGAGTCCCAGGTTGAAAAGCTGAAACTGGAAAATGCAACCCTATACAAGCAGTTTACAGATACTAGTCAACAATTTCATGAAGCCGATACAAATAACCGAGTGCTAAAATCAGATGTAGAAGCTTTGAGAGCTAAGGTATGTATGAAGAGCTAG 306 0.415 GSSDPSDEDDELGPCEQSTNPLDTKRLRRKVSNRESARRSRQRKHAHLSELESQVEKLKLENATLYKQFTDTSQQFHEADTNNRVLKSDVEALRAKVCMKS 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20129g00001 101 PANTHER BASIC LEUCINE ZIPPER 63 2 99 - -
Trme20129g00001 101 FunFam BZIP transcription factor 23 74 - -
Trme20129g00001 101 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 28 43 IPR004827 GO:0003700|GO:0006355
Trme20129g00001 101 CDD bZIP_plant_GBF1 26 77 IPR045314 GO:0003700|GO:0006355
Trme20129g00001 101 Pfam bZIP transcription factor 24 70 IPR004827 GO:0003700|GO:0006355
Trme20129g00001 101 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 23 86 IPR004827 GO:0003700|GO:0006355
Trme20129g00001 101 SMART brlzneu 21 85 IPR004827 GO:0003700|GO:0006355
Trme20129g00001 101 Gene3D - 24 80 - -
Trme20129g00001 101 MobiDBLite consensus disorder prediction 1 50 - -
Trme20129g00001 101 SUPERFAMILY Leucine zipper domain 25 76 IPR046347 GO:0003700|GO:0006355
Trme20129g00001 101 Coils Coil 41 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20129g00001 Trme-Chr20129 366 1184 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20129g00001 3 97 bZIP Transcription Factor Family AT5G24800 58.947 9.64e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trme20129g00001 bZIP_1 5.7e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20129g00001 K25784 - gmx:780555 163.696