Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20120g00001 AAACCACCAGTCTTCTGCATAATTACCGAATATTTAGCCGGTGGTTCATTGAGAAAATACCTTCATCAACAAGAACCACATTCAGTTCCACTTGAACTTGTTCTGAAACTAGCCTTAGACATTGCAAGGGGAATGAAATATCTTCATTCTCAAGGGATACTTCATAGGGATCTCAAATCTGAGAATCTCCTTTTAGGAGAAGATATGTGTGTAAAAGTAGCTGATTTTGGTATCTCATGCTTAGAATCTCAGTGTGGAAGTGCTAAAGGATTTACCGGAACCTACCGTTGGATGGCTCCTGAAATGATCAAAGAAAAACATCATACTAAAAAAGTTGATGTGTATAGTTTTGGTATTGTTCTTTGGGAGCTTTTAACTGCATTGACTCCATTTGACAACATGACACCAGAGCAGGCTGCATTTGCAGTTTCCTACAAGGTTTGTACTTGA 450 0.3844 KPPVFCIITEYLAGGSLRKYLHQQEPHSVPLELVLKLALDIARGMKYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVSYKVCT 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20120g00001 149 PANTHER SERINE-THREONINE PROTEIN KINASE 5 139 - -
Trme20120g00001 149 ProSitePatterns Serine/Threonine protein kinases active-site signature. 53 65 IPR008271 GO:0004672|GO:0006468
Trme20120g00001 149 ProSiteProfiles Protein kinase domain profile. 1 149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme20120g00001 149 Gene3D Transferase(Phosphotransferase) domain 1 1 147 - -
Trme20120g00001 149 PRINTS Tyrosine kinase catalytic domain signature 93 103 IPR001245 GO:0004672|GO:0006468
Trme20120g00001 149 PRINTS Tyrosine kinase catalytic domain signature 47 65 IPR001245 GO:0004672|GO:0006468
Trme20120g00001 149 PRINTS Tyrosine kinase catalytic domain signature 112 134 IPR001245 GO:0004672|GO:0006468
Trme20120g00001 149 PRINTS Tyrosine kinase catalytic domain signature 9 22 IPR001245 GO:0004672|GO:0006468
Trme20120g00001 149 SUPERFAMILY Protein kinase-like (PK-like) 3 143 IPR011009 -
Trme20120g00001 149 Pfam Protein tyrosine and serine/threonine kinase 5 142 IPR001245 GO:0004672|GO:0006468
Trme20120g00001 149 SMART serkin_6 1 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20120g00001 Trme-Chr20120 1 450 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20120g00001 1 146 MAP Kinase Kinase Kinase AT1G62400 72.603 1.72e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trme20120g00001 PK_Tyr_Ser-Thr 6.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20120g00001 - - pvy:116136179 292.737