Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme201180g00001 AACTTTGACTCTTCAAGAATATTAGGAGAAGGTGGCTTTGGACTTGTTTACAAAGGTGTTCTATATGATGGGAGGGATGTAGCAGTGAAGATTCTCAAAAGAGATGATCGGCGTGGTGGCCGTGAATTCTTGGCAGAAGTTGAAATGCTTAGCCGCTTACACCATAGAAATTTAGTTAAATTGATAGGTATATGCATAGAGAAACAAACTCGTTGCCTAGTATATGAGCTTGTCCCTAATGGAAGTGTGGAATCCCACTTGCATGGTGCTGAAAAGGAAAGTGATCCATTGGATTGGAATTCCCGGATGAAGATTGCTCTTGGTGCAGCTCGAGGA 336 0.4226 NFDSSRILGEGGFGLVYKGVLYDGRDVAVKILKRDDRRGGREFLAEVEMLSRLHHRNLVKLIGICIEKQTRCLVYELVPNGSVESHLHGAEKESDPLDWNSRMKIALGAARG 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme201180g00001 112 Pfam Protein tyrosine and serine/threonine kinase 5 112 IPR001245 GO:0004672|GO:0006468
Trme201180g00001 112 ProSiteProfiles Protein kinase domain profile. 2 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme201180g00001 112 SUPERFAMILY Protein kinase-like (PK-like) 1 112 IPR011009 -
Trme201180g00001 112 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 1 77 - -
Trme201180g00001 112 PANTHER OS01G0750732 PROTEIN 1 112 - -
Trme201180g00001 112 ProSitePatterns Protein kinases ATP-binding region signature. 8 30 IPR017441 GO:0005524
Trme201180g00001 112 SMART tyrkin_6 2 110 IPR020635 GO:0004713|GO:0006468
Trme201180g00001 112 Gene3D Transferase(Phosphotransferase) domain 1 1 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme201180g00001 Trme-Chr201180 1 440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme201180g00001 1 112 Receptor kinase-like Gene Family AT5G56890 77.679 1.26e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Trme201180g00001 PK_Tyr_Ser-Thr 3.5e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme201180g00001 - - gmx:100814040 218.394