Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20116g00001 GTGACAAAACATCCTGGAGACGGAGTATATTCTGGTTCAACCTGCAAGCAAGGAGAACTTGAGGCCATAGTCATTGCAACTGGTGTTCACACATTTTTTGGGAAAGCAGCTCATCTTGTCGAAAACACAACACATGTTGGACATTTCCAGAAGGTTCTGACATCTATTGGGAATTTCTGTATCTGTTCAATTGCTATTGGAATGATTATTGAAATCATTGTGATATATGGCGTCCACGGATATGGATACAGAAATGGTATTGATAACCTTCTTGTTCTACTAATTGGTGGAATCCCTATTGCAATGCCAACTGTTCTTTCAGTTACAATGGCTATTGGTTCACATAAATTGTCACAGCAGGGTGCCATAACAAAGAGAATGACTGCTATTGAAGAAATGGCTGGCATGGATGTGTTATGTAGTGACAAAACAGGCACATTAACTCTTAACAAGCTTACAGTGGACAGGGAGATGATTGAGGTTTTTGCTAAAGGTGTTGACAAGGATTTGGTTGTACTTATGGCTGCAAGAGCATCGAGGATGGAGAACCAGGATGCAATTGATTGTGCAATCGTTTCAATGTTGGCAGACCCCAAGGAGGCACGAGCTGGAATAAAAGAAGTTCACTTCCTTCCATTCAATCCAACTGATAAAAGAACTGCACTTACATACTTTGATGCTGCTGGTACTATGCACAGGGTTAGCAAAGGTGCACCAGAGCAG 723 0.4149 VTKHPGDGVYSGSTCKQGELEAIVIATGVHTFFGKAAHLVENTTHVGHFQKVLTSIGNFCICSIAIGMIIEIIVIYGVHGYGYRNGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDREMIEVFAKGVDKDLVVLMAARASRMENQDAIDCAIVSMLADPKEARAGIKEVHFLPFNPTDKRTALTYFDAAGTMHRVSKGAPEQ 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20116g00001 241 SUPERFAMILY Calcium ATPase, transmembrane domain M 41 135 IPR023298 -
Trme20116g00001 241 ProSitePatterns E1-E2 ATPases phosphorylation site. 142 148 IPR018303 -
Trme20116g00001 241 Gene3D - 3 154 - -
Trme20116g00001 241 Pfam E1-E2 ATPase 1 119 - -
Trme20116g00001 241 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 146 240 IPR023299 GO:0000166
Trme20116g00001 241 FunFam Phospholipid-transporting ATPase IC 137 149 - -
Trme20116g00001 241 NCBIfam HAD-IC family P-type ATPase 33 157 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme20116g00001 241 Gene3D - 155 241 IPR023299 GO:0000166
Trme20116g00001 241 FunFam - 152 218 - -
Trme20116g00001 241 PANTHER CALCIUM-TRANSPORTING ATPASE 1 241 - -
Trme20116g00001 241 SUPERFAMILY Calcium ATPase, transduction domain A 2 40 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20116g00001 Trme-Chr20116 22 1361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20116g00001 1 241 Primary Pumps ATPases AT5G62670 85.892 2.01e-148 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20116g00001 K01535 - psat:127079422 436.802