Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20097g00001 ATGACCCTTAAGGGTGGTACAACACAGGCTTGTGCAGCATGCAAATTCCAGAGAAGAAAATGCACACCTGAGTGCCTTTTAGCTCCATATTTCCCTGCAGACCAACCCAAAATATTTCTCAATGTTCACAAACTATTTGGAGTTAGCAACATTGTCAAAATACTAAAGTATTTGGAACCTAGTCAGAAAAAAGTAGCCATGGACTCTATTATCATTCAAGCTAATTATAGAGATAAGTATCCTGTGCATGGATGTTGGGAGGAAATTTGCAGGTTACAATATCAAATATGGTTGATGGAAGAAGAACTTCATGTTGTTTATCAACAGCTTGAAATTTGCAGGCAACAACAACAACAGTTACCTCATGATGATGTGACTTCACAGTTAGAATTGGGAATGGCGCCGCGTTCGTCTAATGCGCTTGCACTCTTTAATCAAACTCCACAACCACAGAGTTATAATATTAACAACAATAATACAGTGGCTGCTCCTTTGTCTGTATCTCAGCAACATTCCTACTCCAACAGCAATAGTGTGGATTATAATAACTCACCCCTCTACATGGATTCAAAGGATAATGCTACAAATCCTAATTTGTGGATTCAGTGCCCTTACACAAGTAACAATAGTAATTCAATAACAATGCAACCTCATCAGTTGATTGCCTCAGAGTCACAGCCACTATCATCTGTCCAACAAGGAGTTGTTGAAGATAATTATGATGAAATGCATTCATTTTTTGATACAGTTGATGATAGGCAATCATACATTTATTCTAAGGAGGCTTATGAATCAAGGTATATTGATCAATTAACTATGCCATAA 825 0.3733 MTLKGGTTQACAACKFQRRKCTPECLLAPYFPADQPKIFLNVHKLFGVSNIVKILKYLEPSQKKVAMDSIIIQANYRDKYPVHGCWEEICRLQYQIWLMEEELHVVYQQLEICRQQQQQLPHDDVTSQLELGMAPRSSNALALFNQTPQPQSYNINNNNTVAAPLSVSQQHSYSNSNSVDYNNSPLYMDSKDNATNPNLWIQCPYTSNNSNSITMQPHQLIASESQPLSSVQQGVVEDNYDEMHSFFDTVDDRQSYIYSKEAYESRYIDQLTMP 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20097g00001 274 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 159 - -
Trme20097g00001 274 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Trme20097g00001 274 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20097g00001 Trme-Chr20097 383 1207 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20097g00001 1 262 AS2 family AT3G47870 38.487 3.95e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme20097g00001 LOB 5.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20097g00001 - - lang:109357116 343.199