Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme200759g00001 ATAAAGTGCAGAAGGGAAGGCGGAGTCCGATTTACAGTCACTGGTTCTGGTATCTTCATTTCAGTGCTGATCAGCAATGTTGCTGGCCACGGAGACATAGTTGCGGTGAAGGTCAAGGGTTCAAGAACAGGTTGGCTTTCAATGGGTCGAAATTGGGGCCAAAACTGGCACATAAACGCATTACTACAGAATCAACCCCTTTCATTTGAGGTTACTAGTAGTGATGGAAAAACAGTTACGGCTTACAACGTTGCTCCCAAGGATTGGAGTTTCGGACAAACCTTTGAAGGCAAGCAATTTGATTATTAA 309 0.4434 IKCRREGGVRFTVTGSGIFISVLISNVAGHGDIVAVKVKGSRTGWLSMGRNWGQNWHINALLQNQPLSFEVTSSDGKTVTAYNVAPKDWSFGQTFEGKQFDY 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme200759g00001 102 FunFam Expansin 8 100 - -
Trme200759g00001 102 PRINTS Expansin signature 7 19 IPR002963 GO:0009664
Trme200759g00001 102 PRINTS Expansin signature 19 40 IPR002963 GO:0009664
Trme200759g00001 102 PRINTS Expansin signature 83 99 IPR002963 GO:0009664
Trme200759g00001 102 PRINTS Expansin signature 54 75 IPR002963 GO:0009664
Trme200759g00001 102 Gene3D - 8 100 IPR036749 -
Trme200759g00001 102 Pfam Expansin C-terminal domain 9 86 IPR007117 -
Trme200759g00001 102 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 18 97 IPR007117 -
Trme200759g00001 102 SUPERFAMILY PHL pollen allergen 5 97 IPR036749 -
Trme200759g00001 102 PRINTS Expansin/Lol pI family signature 45 59 IPR007118 GO:0005576
Trme200759g00001 102 PRINTS Expansin/Lol pI family signature 83 97 IPR007118 GO:0005576
Trme200759g00001 102 PANTHER EXPANSIN-A15 1 100 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme200759g00001 Trme-Chr200759 90 398 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme200759g00001 1 101 Expansin Gene Family AT3G03220 78.218 1.15e-54 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme200759g00001 - - gmx:100809568 199.904