Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20056g00001 ATGGGAAGAGGAAGAGTTGAGTTGAAGAGAATTGAGAACAAAATCAACAGACAAGTTACCTTCGCTAAACGTAGGAACGGGCTTTTGAAAAAAGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCAATAGAGGAAAATTGTACGAGTTTTGCAGCAGTTCAAGATCTTGTGATTTCACTCAATTCGATTTTTGCTGTTTTCATATATAG 231 0.3723 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSRSCDFTQFDFCCFHI 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20056g00001 76 FunFam MADS-box transcription factor MADS-MC 13 68 - -
Trme20056g00001 76 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 63 - -
Trme20056g00001 76 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trme20056g00001 76 Gene3D - 13 70 IPR036879 GO:0003677|GO:0046983
Trme20056g00001 76 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trme20056g00001 76 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trme20056g00001 76 SUPERFAMILY SRF-like 2 62 IPR036879 GO:0003677|GO:0046983
Trme20056g00001 76 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Trme20056g00001 76 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trme20056g00001 76 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trme20056g00001 76 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trme20056g00001 76 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20056g00001 Trme-Chr20056 168 490 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20056g00001 1 61 MADS-box Gene Family AT1G24260 100.000 5.27e-39 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme20056g00001 SRF-TF 2.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20056g00001 - K09264 apan:127245108 123.25