Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20052g00001 ATGAACGAAAACAACTATAGGAGAGTTGAGCAATTTGTGAATGAAGTTGAGATCTTAACCGGCTTACACCATCAAAACCTTGTGTCACTATACGGATGCACTTCGCGCCACAGTCGCGAACTTCTGCTAGTATATGAATATGTTCCTAATGGAACTGTTGCTGATCACCTTCATGGTAAAAAAGCAAAACCTGGCATGTTACCTTGGCATATCAGAATGAACATTGCAATAGAAACTGCTAGTGCATTGGTATATCTTCACGCCACCGACATCATCCATAGAGATGTGAAAACAACCAACATTCTACTTGACAATCATTTTAGTGTCAAAGTAGGAGATTTTGGACTTTCGCGTCTATTTCCAATCCATGTCACACACATTTCAACTGCTCCACAAGGGACTCCAGGTTACGTGGATCCGGAATACCATTTGTACTATCAACTAACTGATAAAAGCGATGTATTTAGCTTCGGAGTTGTGTTGATTGAGTTGATATCATCTATGCCTGCTGTCGATATCTTGAGGAAAAGACAAGATATCAATTTGTCTAACATGGCTATTAAGAAGATTCAAAATGGAACATTGCATGAGCTTGTTGATCCTACACTTGGTTTTGAATCAGATTTCAAGATAAGGAAAATGATCAATGCTGTGGCAGAGTTAGCATTTCAGTGTTTGCAGAATTCTAAAGATGTTAGACCTTCTATGGTTGAAGTGTTGGAAAGGCTTAAGGATATTCAGAGTGATGGAACATATAAATGTAAACCTGAGGTGTTGGATATTTCAGTAGATGATGATATTACTTTGATGAAAAATGAACCACCACCATCATCACCAGATTCAAATATCATTATTAATTTCCCCTGA 867 0.3795 MNENNYRRVEQFVNEVEILTGLHHQNLVSLYGCTSRHSRELLLVYEYVPNGTVADHLHGKKAKPGMLPWHIRMNIAIETASALVYLHATDIIHRDVKTTNILLDNHFSVKVGDFGLSRLFPIHVTHISTAPQGTPGYVDPEYHLYYQLTDKSDVFSFGVVLIELISSMPAVDILRKRQDINLSNMAIKKIQNGTLHELVDPTLGFESDFKIRKMINAVAELAFQCLQNSKDVRPSMVEVLERLKDIQSDGTYKCKPEVLDISVDDDITLMKNEPPPSSPDSNIIINFP 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20052g00001 288 PIRSF ILK 2 257 - -
Trme20052g00001 288 ProSiteProfiles Protein kinase domain profile. 1 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme20052g00001 288 SUPERFAMILY Protein kinase-like (PK-like) 8 272 IPR011009 -
Trme20052g00001 288 ProSitePatterns Serine/Threonine protein kinases active-site signature. 91 103 IPR008271 GO:0004672|GO:0006468
Trme20052g00001 288 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Trme20052g00001 288 Gene3D Transferase(Phosphotransferase) domain 1 49 256 - -
Trme20052g00001 288 Gene3D Phosphorylase Kinase; domain 1 1 48 - -
Trme20052g00001 288 SMART serkin_6 6 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme20052g00001 288 FunFam Wall-associated receptor kinase-like 20 48 255 - -
Trme20052g00001 288 Pfam Protein kinase domain 9 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme20052g00001 288 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 2 282 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20052g00001 Trme-Chr20052 240 1106 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20052g00001 3 281 Receptor kinase-like Gene Family AT1G25390 63.889 1.90e-121 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trme20052g00001 Pkinase 4.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20052g00001 - - vra:106766190 466.077